Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1171 ATGCCAGTCATCGCCGCCAAGCGTAGCTTGCGATCTCACCCTTCCTCGCCCCCCCGCAAATCGCCCCGCCGATGCGCCGCCGCAACCCCCAATTCCACCCCAACTGGAAACAGATTCGGCGCAGATGAAAACCGAGCTGATGTAGCAGCTGTGAAACCTAAATGGAATCCCAGAGATGGTGAGCAATTGAAGATGGTGAAGTTGGCATTGCACTTGTCCACTGCGCCTTCTACGATCGTGTGCCGCGAGGAGGAGCAGAATGTGGTTTTAGGGTTCTGCAAGGGGTGCGTTGAGCACCAAAAGGCCGGGAGTCTGTACATATGCGGGTGTCCAGGAACCGGGAAGTCGTTGTCTATGGAGAAAGTGAAAGAGCAGTTACTCAATTGGGCTACGGAGGCAGGTCTCCCACTGCCTGATGTTTTATCTGTAAATTGTACAACCCTTGCCAACACATCTGATATTTTCACTAAGATACTTGGGTTAAACCGAGCTCAGGGTAAAACGGTTTCAGCCACACCCTTACAGCAACTTCAGAACATGTATTGTCAGAAATCGTCTATCAAAAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATTACCAAAGACAGAGCCGTTCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAatagGTGTAGCCAATGCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAAATTCTTGAAGAAAGGTTAAATGAACTTCCTTATACAGTCTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGACATGCGGAATGTTCTTTTTATATGCAGGAGTGCAATAGATCTGCTTGAAGCAGAAATTAGAGAATCAGCCTGCAATCTGAGTACTTCATTGGAAGAGAAATCATCCTCCAAACAAAATCTTGCTGCAGCTCCTGATTTTATGAAAAAACGAGAATTTGATACTGTAAGGACTGATCATATGGCTCTTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAGCATTTTCGTGGAGCCAAGAAAGATACAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGATATGCAAATCATCTTTAATTCCTCCAGCAGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTAGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCGCCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAATACGTTTTTTTAAAACTGTCTTAAATGATTCTGCTGAAAGACTGGTAGTTTTCATTCAGCTTGACGCGATATCAAAGACTCTTCTTAGATCAAGATAA 1491 0.4299 MPVIAAKRSLRSHPSSPPRKSPRRCAAATPNSTPTGNRFGADENRADVAAVKPKWNPRDGEQLKMVKLALHLSTAPSTIVCREEEQNVVLGFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKEQLLNWATEAGLPLPDVLSVNCTTLANTSDIFTKILGLNRAQGKTVSATPLQQLQNMYCQKSSIKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNELPYTVFQQQALELCARKVAAASGDMRNVLFICRSAIDLLEAEIRESACNLSTSLEEKSSSKQNLAAAPDFMKKREFDTVRTDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDTILGELYKSYVGICKSSLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGIRFFKTVLNDSAERLVVFIQLDAISKTLLRSR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1171 496 Pfam CDC6, C terminal winged helix domain 383 461 IPR015163 -
Ssu9g1171 496 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 13 473 - -
Ssu9g1171 496 CDD Cdc6_C 376 458 IPR015163 -
Ssu9g1171 496 MobiDBLite consensus disorder prediction 1 43 - -
Ssu9g1171 496 Pfam AAA domain 100 217 IPR003593 -
Ssu9g1171 496 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 13 473 - -
Ssu9g1171 496 CDD AAA 97 243 - -
Ssu9g1171 496 Gene3D - 248 371 - -
Ssu9g1171 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 317 IPR027417 -
Ssu9g1171 496 SUPERFAMILY "Winged helix" DNA-binding domain 368 470 IPR036390 -
Ssu9g1171 496 SMART Cdc6_C_2 383 462 IPR015163 -
Ssu9g1171 496 PIRSF Cdc6 5 476 IPR016314 GO:0006270|GO:0051301
Ssu9g1171 496 Gene3D - 372 455 IPR036388 -
Ssu9g1171 496 Gene3D - 60 247 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1171 20 472 Core DNA Replication Machinery Family AT2G29680 59.740 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1171 K02213 - gmx:100791200 833.172