Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1168 ATGTCGTATTCACGGAGATCAAGGtattctccttctccttctccatACAGGGGTTACAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGTCAAGATCCAGAAGCCGTTCAAGGAGTGTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAGGGAAAAGTGATAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACAGTTGAGGAGGCTGATCGATGTGTAAAGTATCTGAATCGCTCTGTACTAGAAGGGCGGGTCATCACGGTGGAGAAGGCTAGAAGGCGACGTGGTCGAACCCCAACACCAGGGAAGTATCTAGGGCTGAGAACTGTTCGCGGGAGTCGTTGCACTCCAAGTTCTCCTCGACGCTCTCCTAGCTATTCTCCTAATAGAAGAAGCTATAGTCGGTCACCGTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATCGGAGGAGGAGGTCATACTCCCCTTATCACCCCCAGCGAAGGAGGTCTTACTCTCCGTACTATAGCCGGTACAGGTCTTATTATCGATATGATCATCGCAGGTCATATTCTCGCTCTCGCTCTCCTTATAGCAGGTCACCTGTCAGTATGCGTGATAGATCATACTCTCCCTATGACTTGCGATATGACTCGCCAGATGATCGCTCCTACAGAAGGCACCATTACAGGTCTGTTTCACGAAGTGCCTCACCTGATGATCACTATTATGGAAGGCACCGTTACAGGTCTATTTCCCGAAGTGCCTCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCCACTCCTGTTTCAAAGAGGAGCTACTCGCGAAGTGTGTCCCCCAGGGCAAGGAGGAGTTATTCAAGAAGCTCTAAGAGGAGTGGCAAATATTCGAAACGCTACTCAAGAAGCCCAAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCCAATACTCCAAGATCTGCCTCTCCTTCAACTTGA 1089 0.4821 MSYSRRSRYSPSPSPYRGYSRSVSRSLSRSRSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRGSRCTPSSPRRSPSYSPNRRSYSRSPYSSDRSRSRSYSPDYRRRRSYSPYHPQRRRSYSPYYSRYRSYYRYDHRRSYSRSRSPYSRSPVSMRDRSYSPYDLRYDSPDDRSYRRHHYRSVSRSASPDDHYYGRHRYRSISRSASPRPRRRSRRSYSRSATPVSKRSYSRSVSPRARRSYSRSSKRSGKYSKRYSRSPSVSASSRSVSRSNTPRSASPST 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1168 362 MobiDBLite consensus disorder prediction 335 362 - -
Ssu9g1168 362 SMART rrm1_1 49 122 IPR000504 GO:0003723
Ssu9g1168 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Ssu9g1168 362 Gene3D - 3 132 IPR012677 -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 218 362 - -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 1 50 - -
Ssu9g1168 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Ssu9g1168 362 MobiDBLite consensus disorder prediction 282 298 - -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 241 278 - -
Ssu9g1168 362 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 8 304 - -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 124 205 - -
Ssu9g1168 362 SUPERFAMILY RNA-binding domain, RBD 39 147 IPR035979 GO:0003676
Ssu9g1168 362 MobiDBLite consensus disorder prediction 299 320 - -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 145 178 - -
Ssu9g1168 362 MobiDBLite consensus disorder prediction 1 27 - -
Ssu9g1168 362 CDD RRM_RBMX_like 47 124 - -
Ssu9g1168 362 PANTHER TRANSFORMER-2-RELATED 8 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1168 Ssu-Chr9 43927546 43929913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1168 49 130 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 4.20e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1168 - - gmx:100805126 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1168 9 43927546 43929913 Ssu9g1168 9 43927546 43929913 ECH