Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1147 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAGCCGTGGTGGCGTGGTATTGGGTGCTATCCTTTGGCTCAAACAATGGCTGGGGCAAATGCATCCAATTCTTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGCCAGTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATGAACCAGgTAATTATGGGCAAGAACAGCAAGGGATGCAGCATGCTGCATCATCTGCACCGTCCTTGCGCGAAGAATGCCTTAGTCAGACGCCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGTGGCATGATGGCAGCTTATGGTCACCAGCAATTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGCAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGTTTTGCGAAGAAATCTGACGCTGAGGCCTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGTAAGAGCATCAAAAGTGAACAACAGGTTCGAAGCACCCAGTTACCAAAATGGCAGTGACTCCTACCAGTGA 924 0.4643 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGCYPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGMQHAASSAPSLREECLSQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEASNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDVRASKVNNRFEAPSYQNGSDSYQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1147 307 MobiDBLite consensus disorder prediction 45 74 - -
Ssu9g1147 307 MobiDBLite consensus disorder prediction 246 307 - -
Ssu9g1147 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 MobiDBLite consensus disorder prediction 45 116 - -
Ssu9g1147 307 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 MobiDBLite consensus disorder prediction 1 20 - -
Ssu9g1147 307 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 Gene3D - 174 236 - -
Ssu9g1147 307 MobiDBLite consensus disorder prediction 1 23 - -
Ssu9g1147 307 MobiDBLite consensus disorder prediction 207 307 - -
Ssu9g1147 307 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 MobiDBLite consensus disorder prediction 87 116 - -
Ssu9g1147 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 307 IPR001289 GO:0003700|GO:0006355
Ssu9g1147 307 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Ssu9g1147 307 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 307 - -
Ssu9g1147 307 MobiDBLite consensus disorder prediction 209 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1147 Ssu-Chr9 43357637 43360413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1147 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.962 1.94e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu9g1147 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1147 K08064 - gmx:100808378 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1147 9 43357637 43360413 Ssu6g3625 6 79938426 79940769 PCT