Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1137 ATGCAGACTAGAATTGAAGTGAAACCTACTCGTATTGCATCCGGATTCTTAGATGACTTGTCTGAGACTCGCAAGATGGGTTCTCCAAATGGAAGAGCAGTGCATAAGTCTGACGATGAAGTTCCTTATGACTCCGAAATAAATTTTCACCAGTCAGAATCTAGTCTGGCGGATGTACATGGATCACATTCTGGGGAATCTTGGACTGCTCGTCGTGAAATGTTGGGGGGTACTATTTACAAGAGCATACAGGTTGTAGTTTTCTCTAACAAACTCAACTTGCTTTTGCCTTTTGGGCCTCTTGCAATTCTTGTGCAGGAGTGGACTGGTCATCATGGCTGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGTGGAGCGGTTAGGTTATGCTACCGAACAGCTGGCATTTTACACTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTCCAGCTCTCTTTGCTGGGTTCAATTTTGTCCAATATGTTGCTGGTGCTTGGATGTGCATTCTTAAGTGGTGGGATTGTTTTTAATAAGAAGGAACAAGTGTTTAACAAGGCAGCTGCTTCTGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATACTTTTTCCTGCGGTTCTACACTACACACACACTGAGGTCCATGTTGGGAAGTCAGAGTTGTCTCTTTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATGCCTCTGTGAATGAGGAAGAGGGTCAGAATGGAAACAACTCAAATGATGATGAACATCCAGATATTTCTAAATGGGAATTAATAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCACTATAGAGGGAGCGTCTACTGCATGGGGAATTCCATTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACGCAGATATCTATGTTTATGATACCATTTTGTGTTATTATTGGCTGGATAATGGGGCATCCTATGGACTTAAACTTCCAACTTTTTGAGACTGCAGCACTATTTCTTACTGTTATAGTCGTAGCTTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTGTTCTTTGCTATCTGATAGTGGCAGCCAGTTTTTATGTGCATATAGATTCCTCTCAATAG 1362 0.4141 MQTRIEVKPTRIASGFLDDLSETRKMGSPNGRAVHKSDDEVPYDSEINFHQSESSLADVHGSHSGESWTARREMLGGTIYKSIQVVVFSNKLNLLLPFGPLAILVQEWTGHHGWVFALSLLGIMPLVERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFNKKEQVFNKAAASVNSGLLLMAVMGILFPAVLHYTHTEVHVGKSELSLSRFSSCIMLVAYAAYLFFQLKSQRSLYASVNEEEGQNGNNSNDDEHPDISKWELIIWLSVMTAWISILSEYLVGTIEGASTAWGIPLAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFMIPFCVIIGWIMGHPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHIDSSQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1137 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 29 452 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu9g1137 453 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016021|GO:0055085
Ssu9g1137 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016021|GO:0055085
Ssu9g1137 453 TIGRFAM caca2: calcium/proton exchanger 81 445 - -
Ssu9g1137 453 TIGRFAM cax: calcium/proton exchanger 95 446 IPR004798 GO:0006816|GO:0015369
Ssu9g1137 453 Gene3D - 141 282 IPR044880 -
Ssu9g1137 453 Gene3D - 290 447 IPR044880 -
Ssu9g1137 453 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 29 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1137 Ssu-Chr9 43193550 43228057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1137 32 453 Antiporters AT1G55730 70.142 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1137 K07300 - gmx:100799276 797.349