Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1136 ATGACGGCAACGCTCAACCTCGCCGCCGGCAGTCTTGCTCTCCGTTTCTCTTCCTCCGGCGACCGCGCCGCCTGCTTTCCCCGCCGGACCTCTGTCCGCGCAGTCGCGGCGGAAGCGATCGAGATGCGGCGGCCGGCGGCGAGCCTCTACGAGGTGCTGCGCGTTGAGCGAGACGCGTCGCGGACGGAGATCAAATCGGCGTACCGGAGCCTCGCGAAGCTCTACCATCCCGACGCGGCCGTGCGGCGGTCGCCGGAGACCGACGGACACGGCGGCGATGGCGGAGAGTTCATTCAGATCCGAAACGCGTACGAGACGCTGTCGGATCCGTCAGCGAGGGCGATGTACGACCTGACGCTGGCGGCGGCGCACGGCGGAAGATACCGCCGGTTTTCGGCTCCGCTGAGTCGGAACCGGTCGCCGGCGTTTTACGCGACGCGAAGATGGGAAACGGACCAATGCTGGTAG 468 0.6774 MTATLNLAAGSLALRFSSSGDRAACFPRRTSVRAVAAEAIEMRRPAASLYEVLRVERDASRTEIKSAYRSLAKLYHPDAAVRRSPETDGHGGDGGEFIQIRNAYETLSDPSARAMYDLTLAAAHGGRYRRFSAPLSRNRSPAFYATRRWETDQCW 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1136 155 CDD DnaJ 50 109 IPR001623 -
Ssu9g1136 155 Gene3D DnaJ domain 35 132 IPR036869 -
Ssu9g1136 155 SMART dnaj_3 47 112 IPR001623 -
Ssu9g1136 155 Pfam DnaJ domain 49 117 IPR001623 -
Ssu9g1136 155 SUPERFAMILY Chaperone J-domain 46 128 IPR036869 -
Ssu9g1136 155 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 1 155 - -
Ssu9g1136 155 ProSitePatterns Nt-dnaJ domain signature. 97 116 IPR018253 -
Ssu9g1136 155 PRINTS DnaJ domain signature 92 112 IPR001623 -
Ssu9g1136 155 PRINTS DnaJ domain signature 50 68 IPR001623 -
Ssu9g1136 155 PRINTS DnaJ domain signature 68 83 IPR001623 -
Ssu9g1136 155 ProSiteProfiles dnaJ domain profile. 48 120 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1136 Ssu-Chr9 43168447 43168914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1136 50 117 C2H2 Transcription Factor Family AT1G74250 39.706 1.26e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1136 - - gmx:100778445 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1136 9 43168447 43168914 Ssu6g3614 6 79864269 79864703 PCT