Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1134 ATGAAGATAACTGTCATGACTGCTGATGAGCAAATTCTCTCGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAGGGAGGTGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGCTGCTGCATCTAGtgGATCTACCAATGATTTGAGCTTAAATGCTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGATCAGCTCTTTCAGAGTGATCCCGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAGGAAATTTTAAGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCagAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGgTTATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCGGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGaTTGGGAGTATATTTTATCCTTGCTCATTCTTGGTGCTGGATTCTTCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGtgtataattgatttgaaaGAAAGTGTTCTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGATGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAGTTACGTTAGGGAGCAATAATCCTTCGATAGGAGGCCACTCTTCTGGAGGAGCTTCTGGTGATAGGTCTAAGGATTCTGACTTTGAAGGCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGCTATACAAGCTCTTAAATTATTCAATGGCAACGAGGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG 1221 0.4234 MKITVMTADEQILSLDVDPHESVENVKALLEVETSVPLQQQQLLFNGREVRNSEKLSALGVKDDDLLMMVSGAAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMDQLFQSDPELAQAILGNDLNRLQEILRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDRRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSSNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQVTLGSNNPSIGGHSSGGASGDRSKDSDFEGKVAKLVELGFERNAAIQALKLFNGNEEQAAGFLFGG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1134 406 PANTHER AT13091P 1 404 - -
Ssu9g1134 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Ssu9g1134 406 Coils Coil 130 150 - -
Ssu9g1134 406 Gene3D Acid Proteases 176 322 IPR021109 -
Ssu9g1134 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 363 406 IPR015940 -
Ssu9g1134 406 Pfam UBA/TS-N domain 372 402 IPR015940 -
Ssu9g1134 406 MobiDBLite consensus disorder prediction 338 359 - -
Ssu9g1134 406 Gene3D - 369 404 - -
Ssu9g1134 406 Gene3D - 1 83 - -
Ssu9g1134 406 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Ssu9g1134 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Ssu9g1134 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Ssu9g1134 406 CDD UBA_scDdi1_like 369 404 - -
Ssu9g1134 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Ssu9g1134 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 404 - -
Ssu9g1134 406 SMART uba_6 368 405 IPR015940 -
Ssu9g1134 406 SUPERFAMILY UBA-like 357 406 IPR009060 GO:0005515
Ssu9g1134 406 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Ssu9g1134 406 MobiDBLite consensus disorder prediction 335 365 - -
Ssu9g1134 406 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Ssu9g1134 406 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1134 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 27.143 3.76e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1134 K11885 - gmx:100779464 735.717