Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1130 ATGAGCGATTCTGCATACAGAGTCGAAACCACACCACGCCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTACCGCAAATCCGATCCTTTCAAGATCGGAAAGTGGAACTGGCATTTGTCGGTGGAGAAGAACAGggttttgtttgttaaattgttCCCAGAAATATCCAATCTAACGAGAGACAACCCCCCTATTGCATCTTTCATCGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGGCCCTCACACATCCAGAAATAAAGGACAAAGTGCTAAAGAACAACGAGGATTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAACCTTGTTCCATTTGGGCTCAAGGATTTACTCAGCAAAGATCAAATGCAAAAGCTATAGAGTCTCTTGGTAGAATGCTAACAGAAGGCATCCACACAGACATCACCATCAATGCTTCTGATGGAAGTATAGGAGCTCATCGAGCTGTTCTTGCTGCCAGATCACCTGTCTTCCGCAGCATGTTCTCACACAATCTTCAGGAGAAAGAGTTGTCTACCATAAACATCTCAGACATGTCAATTGAAGCGTGCCAGGCTTTTCTCAATTATCTTTATGGCATCATCAAACATGAAGAGTTTCTGACTCATAGGCTGGCCCTTCTGCATGCGGCCGACAAGTATGACATATCTGACTTGAGAGATGCATGCCATGATAGTCTTCTAGAAGATATTGACACAAAAAATGTACTTGAGAGGCTCCAAAATGCATCTCTATATCAGTTGATGAAACTGAAGATGAGTTGCATCCGATATCTCGTGAAGTTTGGTAAAATATACGAAATTCGGGATGATTTCAATACCTTCCTGCAAAATGCAGATAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTCTGA 987 0.4205 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIVRVVSSVGDRKALTHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAQGFTQQRSNAKAIESLGRMLTEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSIEACQAFLNYLYGIIKHEEFLTHRLALLHAADKYDISDLRDACHDSLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIYEIRDDFNTFLQNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1130 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Ssu9g1130 328 SUPERFAMILY POZ domain 149 259 IPR011333 -
Ssu9g1130 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Ssu9g1130 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Ssu9g1130 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
Ssu9g1130 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Ssu9g1130 328 Gene3D Potassium Channel Kv1.1; Chain A 139 291 IPR011333 -
Ssu9g1130 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1130 Ssu-Chr9 43081475 43083681 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu9g1130 BTB 9.5e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1130 K10523 - gmx:100790186 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1130 9 43081475 43083681 Ssu6g2616 6 61248224 61254096 PCT