Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1125 ATggtattgtatctaagttttattcttCTGGAAGCAGCCAAGGAGTTGTTGAATGGCAGTCAGAGGTTCTTAGGGGGGCTTTCTCATCCCAATCTTGTTAAGTTGTTGGGATTTGGGCGAGAGGATAGTGAACTGTTTCTGGTGTATGAATTCATGCATCGTGGCAGCTTGGATAACCACCTATTTGGAAGTAAGAGTTGA 201 0.398 MVLYLSFILLEAAKELLNGSQRFLGGLSHPNLVKLLGFGREDSELFLVYEFMHRGSLDNHLFGSKS 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1125 66 Pfam Protein tyrosine and serine/threonine kinase 20 61 IPR001245 GO:0004672|GO:0006468
Ssu9g1125 66 Gene3D Transferase(Phosphotransferase) domain 1 6 66 - -
Ssu9g1125 66 SUPERFAMILY Protein kinase-like (PK-like) 22 65 IPR011009 -
Ssu9g1125 66 PANTHER OS01G0588500 PROTEIN-RELATED 22 64 - -
Ssu9g1125 66 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 22 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1125 Ssu-Chr9 43010030 43010325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1125 24 64 Receptor kinase-like Gene Family AT2G43690 56.098 8.04e-11 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu9g1125 PK_Tyr_Ser-Thr 3.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1125 - - gmx:100813304 84.3445