LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1122	ATGCCACAAGAGAGCTCCCAAAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTCTGGTCTCCATCAACAAGGAGGCTTCATGCACTGCCACGGAGGAGAGTTTCAATGATCATGAATTGGCTCAGAGGAAGGCAGAGGAAGCAGCTTCAAGGAGATACAAAGCAACAGAATGGCTACGCCAAATGGACCATGTTGCATCATCATCACTTTCCCCATCACCCTCTGAAGAAGAGTTTTGCCTTGCACTCCGCAATGGCCTCATTCTCTGCAATGTTCTCAACAAAGTTAACCCCGGTGCTGTCCTTAAGGTGGTGGAGAATCCTGGGCTTGCTGTTCAGTCTGCAGAGGGGGCGGCCCACTCTGCAATTCAGTATTTTGAGAACATGCGGAACTTTTTGGAGGCTGTCAAGGATATGCAGCTTTTGACATTTGAAGCTTCTGATTTGGAGAAGGGGGGCTCTTCAAATAAAGTAGTGGACTGCATTCTATGTTTGAAGGGGTTTTATGAATGGAAGTTATCTGGTGGGGTTGGTGTTTGGAAGTATGGGGGAACTGTGAGGATTACTTCCTTTCCAAAGAAGTCTCCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGAATCACTGGATGAGTCAGAATCATCACAGTATGAACAACTGCTGGAATTTCTTCAACTATCTGAAGAATTCTTGATTGAAGAAACCAGAACTGCCAATGCTCTGGCTTTCCTTTATGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGGCCAATGGGATTGAAGATCTGCCTCTGAATGCAATGGTAATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCATCTTTGCTTGCTTCTCAAGGCACTCAGCTTGGACTTTTcctgaagaaaatattaaaaggtgACATTGGTTGTCTCTCAAAGAGAGAGTTCATAGAAGCCATCTCATTATATCTTAATCAAAGACGTAGTTTGGCATCAAATGATTTCTCTAAATTCTGCAATTGTGGTGGAAAACGTGATAGTATTCAACAAAACTCCAATTATTCTGCAAAATATGCTGAAGTAATCAATACTCAACAGAAACAACTTGAGGGAATGAAGTACTTTTTAGAAGAGACAAAATTGGAGGTCAAACAAATTCAATCAGAGTGGGAAGAAGAATTGAGTAGGCTAGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCTCTTCCTACCACAAAGTTTTGGAGGAGAACCGCCTTCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGCAGAGTGAGGCCATTCTTACCAGGACAATCAAATGGACAGTCTACGGTAGACTATATTGGAGAAAATGGAGATATGATGATCGTAAATCCCCTTAAGAATGGAAAAGATGCTAGAAGGgtattttcattcaataagGTGTTTGGAACAAGTGTAACACAAgAACAGATTTATGCTGACACTCAACCGTTGGTCAGATCTGTTTTAGATGGTTATAATGTATGCATCTTTGCATACGGACAGACTGGCTCAGGGAAAACATACACAATGAGTGGCCCTGATCTGACAACTGAAGAGACATGGGGTGTAAACTATAGGGCTTTGCGTGACTTATTTCACATATCAAAGGAAAGGGCTGATTCCATAAAATATGAAGTTTTCGTTCAGATGattgaaatatacaatgaaCAAGTGAGAGATTTATTAGTCAGTGATGGCTCCAACAGAAGATATCCTTTAAGCAGCGCTTCTATCACAATTCTTTTTTCAGTAAGCCAGCTCAAATTCTAA	1821	0.4064	MPQESSQNSFFTSPSKRGLKGLVSINKEASCTATEESFNDHELAQRKAEEAASRRYKATEWLRQMDHVASSSLSPSPSEEEFCLALRNGLILCNVLNKVNPGAVLKVVENPGLAVQSAEGAAHSAIQYFENMRNFLEAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGFYEWKLSGGVGVWKYGGTVRITSFPKKSPSSIVGSESADESLDESESSQYEQLLEFLQLSEEFLIEETRTANALAFLYDHFGLRLLQAYLREANGIEDLPLNAMVIDTLLSKVVKDFSSLLASQGTQLGLFLKKILKGDIGCLSKREFIEAISLYLNQRRSLASNDFSKFCNCGGKRDSIQQNSNYSAKYAEVINTQQKQLEGMKYFLEETKLEVKQIQSEWEEELSRLEDHIKSLEVASSSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPLKNGKDARRVFSFNKVFGTSVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALRDLFHISKERADSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRYPLSSASITILFSVSQLKF	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1122	606	PANTHER	HEAVY CHAIN, PUTATIVE-RELATED	19	590	-	-
	Ssu9g1122	606	SMART	ch_5	54	171	IPR001715	GO:0005515
	Ssu9g1122	606	Pfam	Calponin homology (CH) domain	53	173	IPR001715	GO:0005515
	Ssu9g1122	606	ProSiteProfiles	Kinesin motor domain profile.	433	606	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu9g1122	606	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	390	589	IPR027417	-
	Ssu9g1122	606	ProSiteProfiles	Calponin homology (CH) domain profile.	52	173	IPR001715	GO:0005515
	Ssu9g1122	606	PANTHER	KINESIN-LIKE PROTEIN KLP-3	19	590	-	-
	Ssu9g1122	606	Coils	Coil	389	409	-	-
	Ssu9g1122	606	Pfam	Microtubule binding	419	579	IPR031852	GO:0008017
	Ssu9g1122	606	Gene3D	-	44	172	IPR036872	-
	Ssu9g1122	606	SMART	kinesin_4	431	603	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu9g1122	606	Gene3D	Kinesin motor domain	376	599	IPR036961	-
	Ssu9g1122	606	SUPERFAMILY	Calponin-homology domain, CH-domain	46	200	IPR036872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1122	Ssu-Chr9	42908249	42918216	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1122	424	586	Calmodulin-binding Proteins	AT5G65930	38.690	3.06e-30	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1122	K10406		-	gmx:100786466	1058.9