Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1120 ATGCCTGGAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGATTCTCTCATTAAACTCCCTTCTCTTTTTTCCATGTTGTTACTCCCTTGATGAGCAAGGCCAAGCTCTTATAGCATGGAAAAACAGTTTAAACATCACTTCAGATGTGTTAGCATCATGGAATCCTTCAGCCTCAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCAGAAGGAGAAGTGATAGAGATAAACTTGAAGTCAGTGAAGTTGCAAGGCTCATTgccttcaaattttcaacctCTGAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACCTCACAGGCAGGATCCCGAAAGAGATTGGAGACTATCTAGAGCTCATCTTTGTTGATCTCAGTGGCAATTCACTCTTTGGTGAAATCCCAGTAGAAATTTGCAGCCTAAGCAAACTGAAGAGTTTGTCTCTCCATACAAACTTCCTTCAAGGAAACATTCCATCCAACATTGGCAATCTATCAGGTCTTGTGAACTTGACACTCTATGACAATCACCTCAGTGGTGAAATTCCAAAGAGCATTGGCTccttaagcaagctccaagtCTTCAGAGCTGGTGGCAATAAGAACCTCAAGGGTGAGATCCCATGGGAGATTGGAAACTGCACCAACTTGGTCATGCTAGGCCTTGCAGAAACCAGCATTTCAGGGAGCCTTCCTTCTTCAATCAAAAtgctgaaaaaaattaagaccaTAGCCATATACACAACTCTATTGTCAGGCTCCATTCCAGAAGAGATTGGCAATTGCAGTGCGTTGCAGAACCTGTACTTGCATCAGAACTCAATCTCAGGCTCAATACCAAGCCAAATTGGAGAACTCAGCAAGCTCAAGAGTCTACTTTTATGGCAAAACAATATAGTAGGTACTATCCCTGAAGAGCTTGGAATCTGCACAGAGATAAAAGTCATAGACTTATCAGAAAACCTTCTCACAGGTAGCATACCAAGGAGTGTTGGTAAGCTTTCAAATCTCCAAGAGCTTCAACTAAGTGTCAATCAGCTCTCAGGTATAATCCCTCCAGAGATTTCAAATTGCACTTCTCTGATTCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGCAACTTGAAAGGCTTAACTCTCTTCTTTGCATGGAAGAACAAGCTAACAGGAAACATCCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCACTTGATCTGTCTTACAACAACTTGATTGGTCCAATACCCAAACAACTATTTGGGTTGAGGAACCTCACCAAACTGCTGCTTCTTTCCAATGATTTATCAGGCTTTATACCACCTGATATAGGAAACTGCACAAGCCTCTACAGGCTGAGGTTGAATAACAATAGACTAGTAGGTAACATTCCACCAGAGATTGGCAACTTGAAGAGTTTGGATTTTATGGACATGAGCAACAATCATCTTGCAGGGGAGATTCCTCCAACACTATCTGGATGCCAGAATGTTGAGTTTCTAGACCTTCATTCCAATAGTCTCACTGGTTCTGTTCCAGATTCCCTTCCCAAAAGCCTTCAGTTGATTGACTTGTCAGACAACATGCTAACAGGTGCATTGAGTCACACCATTGGTTCATTGGTTGAGTTGACCAAACTTAACCTTGGAAACAATCAGCTAAGTGGAAGAATCCCATCAGAGATCTTGTCTTGCACTAAGCTACAACTTCTGGACCTGGGAAGCAATAGTTTCAATGGAGAAATTCCCAAAGAAGTTGGTCTAATTCCTTCACTAGAAATCTCTCTCAATCTTAGCTTCAACCAGTTTTCTGGTAAAATTCCTTCCCAGTTCTCTAGTCTTAACAAACTAGGAGTGCTTGATCTCTCACACAACAAGCTCTCAGGGAATTTAGATGCCCTTTCTGACCTTGAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGGCCTCTCTGGTGAGTTGCCTAACACCTCATTCTTCCACAAACTCCCTCTTAGTGATCTTGCTGAAAATCAAGGTCTCTACATTGCTGGGGGAATTGTAACTCCTGCTGACAAAGGTCATGCTAGATCAGCTATGAAGTTCATTATGTCCATTCTCTTAAGCACCAGTGCAGTACTAGTGCTGCTCACAATCTATGTCCTAGTCAGAACTCACATGGCCAGCAAGGTGCTCATGGAAAATGAAACTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCAGGAGTTGTGTACAAGGTTACAATTCCAAATGGTGAAACACTGGCAGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACATTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTAGGCTGGGGATCAAACAAGAACTTGAAATTGCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGCTCATTGCTCCATGGTTCAGGAAAGGGAAAGGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCACACGCACTTGCATATTTGCATCATGATTGTTTGCTTGCTATTGTTCATGCAGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGATATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAATTGCAACTGAAAATTGTGACAATACTAATTCCAGGCCAGTTCAAAGACATTACCTAGCTGGTTCATATGGATACATGGCTcctgAGCATGCATCACTACAGCCTATCACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCATCCATTAGACCCAACTCTACCAGGCGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGGCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGCTGAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTACAAACTCTAGCAGTGTCATTTCTATGTGTCAGCACTAAAGCTGATGACCGCCCAACAATGAAAGATGTTGTTGCAATGCTCAAGGAAATTAGACCCCTTGAGACCTCAAGGGCAGACCCTGACGTATTGAAGGGAGGTTTAACAGCACATAGTTCACCACCACCTCCAAAGAATGTGGTCTCAGATGGATCTTCTACATGTTCCTACAATTTCTCAGACAACTCAACCAATTGA 3273 0.4195 MPGSLRNLSLSPKIFSFTLILSLNSLLFFPCCYSLDEQGQALIAWKNSLNITSDVLASWNPSASSPCNWFGVYCNSEGEVIEINLKSVKLQGSLPSNFQPLRSLKILVLSSTNLTGRIPKEIGDYLELIFVDLSGNSLFGEIPVEICSLSKLKSLSLHTNFLQGNIPSNIGNLSGLVNLTLYDNHLSGEIPKSIGSLSKLQVFRAGGNKNLKGEIPWEIGNCTNLVMLGLAETSISGSLPSSIKMLKKIKTIAIYTTLLSGSIPEEIGNCSALQNLYLHQNSISGSIPSQIGELSKLKSLLLWQNNIVGTIPEELGICTEIKVIDLSENLLTGSIPRSVGKLSNLQELQLSVNQLSGIIPPEISNCTSLIQLELDNNALSGEIPDLIGNLKGLTLFFAWKNKLTGNIPDSLSECQELEALDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNNNRLVGNIPPEIGNLKSLDFMDMSNNHLAGEIPPTLSGCQNVEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNMLTGALSHTIGSLVELTKLNLGNNQLSGRIPSEILSCTKLQLLDLGSNSFNGEIPKEVGLIPSLEISLNLSFNQFSGKIPSQFSSLNKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGLSGELPNTSFFHKLPLSDLAENQGLYIAGGIVTPADKGHARSAMKFIMSILLSTSAVLVLLTIYVLVRTHMASKVLMENETWEMTLYQKLDFSIDDIVLNLTSANVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCLLAIVHADVKAMNVLLGPGYQPYLADFGLARIATENCDNTNSRPVQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTKADDRPTMKDVVAMLKEIRPLETSRADPDVLKGGLTAHSSPPPPKNVVSDGSSTCSYNFSDNSTN 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1120 1090 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 336 432 IPR032675 -
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 610 693 IPR032675 -
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 35 189 IPR032675 -
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 433 532 IPR032675 -
Ssu9g1120 1090 SUPERFAMILY RNI-like 82 404 - -
Ssu9g1120 1090 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1120 1090 SUPERFAMILY Protein kinase-like (PK-like) 764 1050 IPR011009 -
Ssu9g1120 1090 SMART serkin_6 765 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 190 335 IPR032675 -
Ssu9g1120 1090 Gene3D Transferase(Phosphotransferase) domain 1 839 1055 - -
Ssu9g1120 1090 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Ssu9g1120 1090 MobiDBLite consensus disorder prediction 1067 1090 - -
Ssu9g1120 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Ssu9g1120 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1056 - -
Ssu9g1120 1090 Pfam Protein kinase domain 768 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1120 1090 SMART LRR_typ_2 294 318 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 149 173 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 629 651 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 556 580 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 101 125 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 486 510 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 342 366 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 652 676 IPR003591 -
Ssu9g1120 1090 SMART LRR_typ_2 438 462 IPR003591 -
Ssu9g1120 1090 Pfam Leucine rich repeat 610 665 IPR001611 GO:0005515
Ssu9g1120 1090 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Ssu9g1120 1090 Gene3D Ribonuclease Inhibitor 533 609 IPR032675 -
Ssu9g1120 1090 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Ssu9g1120 1090 PRINTS Leucine-rich repeat signature 629 642 - -
Ssu9g1120 1090 PRINTS Leucine-rich repeat signature 535 548 - -
Ssu9g1120 1090 SUPERFAMILY RNI-like 307 659 - -
Ssu9g1120 1090 MobiDBLite consensus disorder prediction 1050 1090 - -
Ssu9g1120 1090 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 1056 - -
Ssu9g1120 1090 Gene3D Phosphorylase Kinase; domain 1 730 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1120 Ssu-Chr9 42888782 42892337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1120 32 1089 Receptor kinase-like Gene Family AT5G56040 67.666 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu9g1120 Pkinase 3.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1120 - - gmx:100802880 1979.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1120 9 42888782 42892337 Ssu9g1120 9 42888782 42892337 ECH