Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1112 atgATAACAAGCACAACATTCACTTTGGCCATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGGTGTGGATAGCAGGTTATGATATTGGCTGTGTCCTTAATCTGCTGCTACTTTGTGGCCGCTACCATCAACGTCATGTGACTCATGGGAATGCTCTTAGCCTTTCTGATTTGGAGCAGCAGAGAAACAATGGAGAAACAAGGAACTCACATTTGATGGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTTTGGGCCTTTGACTCACGTTTTGGATCTTTCCAACAAGCTCCAAAACTCCAAGTGCTCTGCATCATCCTGCTTGCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTCTTGTTTTTGCTATTGTGTTGTTGTGTCCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCTAGGGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGGTTCGCACCAACTTAGACATTGGCAATGACTCTCAAAGCAGTGAAAGATTGATCAATGAAGATCCAGAATGTTGCATTTGTTTGGCCAAGTACAAAGACAAGGAAGAAGTTAGGCAATTACCATGCTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCCCTTTGTAAACAAGGATTACATAGGTAG 735 0.4327 MITSTTFTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQRHVTHGNALSLSDLEQQRNNGETRNSHLMDKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPKLQVLCIILLAWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRYKGVRTNLDIGNDSQSSERLINEDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLHR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1112 244 SUPERFAMILY RING/U-box 189 242 - -
Ssu9g1112 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 243 IPR013083 -
Ssu9g1112 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 243 - -
Ssu9g1112 244 Coils Coil 56 76 - -
Ssu9g1112 244 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 2 243 - -
Ssu9g1112 244 Pfam RING-like zinc finger 197 225 IPR001841 -
Ssu9g1112 244 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Ssu9g1112 244 CDD RING-H2_RNF111_like 196 239 - -
Ssu9g1112 244 SMART ring_2 198 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1112 Ssu-Chr9 42776515 42779481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1112 2 242 C3H Transcription Factor Family AT4G26580 69.959 1.51e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1112 - - gmx:100818715 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1112 9 42776515 42779481 Ssu9g1112 9 42776515 42779481 ECH