Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1090 ATGTCCTTACTAACCACCAGCACCATcatcctctttctcttctccttctccttctccttcctaACAACCACCCTCTCCCACAACACCACCGCCTTCGCCTTCACCTTCACCTTCCCCTCCTTCGCCCTCCTCAACATCACCCTCCTCGGCGACTCCTTCCTCCGCGACGGCGTGGTCGGCCTCACCCGCTCCACCCCCGTCCCCGCCTCCTCCTCCGGCACCCTCCTCTACAACCACCCCATCCCCACCCTCCCCCCCTCCTCCCTCTCCACCACCTTCTCCTTCTCCATCACCAacaccacctccacctccaccctcACCTTCTTCCTCAACTCCTCCCGCACCCTCTCCCTCCACCTCCGCCCCAACCAAACCCACCTCGCCCTACACCTCACCACCACCGCCTCAAACTTCACCCAGCCCAACCCGGCATCCGTTCATCTCAACGCTGCCAACCCCATCACTTCCTGGCTCGACTACCATGCCCACGAGAGAAAACTCAACGTCTTCTTGAACTGCTCATCGCCTTCTTCCAAGCCTCGGAACCCAACCCTAAGCGCTGACCTTGACCTTTCCGACTACTTCAGGGACAATCTCTACGTGGGGTTCTCCGGTTCCACGCAAGGAAGCACCGACCTTATCCGAGTCATGAGTTGGAGCTTCGAGTTTGACTCGTTTCAGAAACCGGGTCTGAACTTGCACCCCCACAACGCTTCTAGAAGCCCCGCCAGCGTTGCGGTTGAGGACATTCCCGCTTCTTCAAACTCCGCCGAGGGTAACAGCAAGAGGTTTGTGATTGGCGTTGGTGCTGTGGTTCCTGCTTTTTTCTGCGTGGTGCTTGTGTTTTTGGGGTATGTTTCTTACCTCAAGTGGCGCGGCGTGAGGAAGCACGAGAGTTTTGGGAGGTGTTGTCCTAAGGAGTTTGGTTACAGGGAGGTGAAGTTGGCCACAAAGGGGTTTCATGCTTCGAGGGTCATCGGGAAAGGATCGTTTGGGACAGTTTACAAGGCTTTGTTTGAGTCTTCCGGGACCATTGCTGCGGTGAAGAGGTCGAGGCAATATTCTCATGAGGGGAGAACTGAGTTTTTGGCTGAGCTCTCTGTTATAGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTCTTAGGTTGGTGTGTTGAGAAGGGTGAGTTGTTGCTTGTGTATGAGTTTATGCCCAATGGGAGCCTGGACAAGACTGATGTGTTCAGCTATGGGGTGGTGGTGCTTGAGGTGGCTTGTGGGAGGAGGCCAATTGAGAGGGAGGGGCAGAAGATGGTGAATTTGGTGGATTGGGTTTGGGGGTTGCACTCTCAGGGGAGGATCATTGAGGCAGCTGATAGGAGGTTGAATTGGGAGTTCAAGGAAGGGGAGATGAAGAGGCTTTtgcttttggggttgagttgTGCTAACCCTGATAGTGCACAGAGGCCTTCTATGAGAAGAGTCTTGCAGATTCTTAACAGTGAAGGAGTGGCTCTTGTGGTGCCTAAGGTGAAACCAACGCTTACTTTCTCTTCTGGCCTGCCTTTGAGTCTTGATGAGATTGTTTCCGATGCCGAGGAAGAGTTCAGTTCTGCCCAGGTTGTGTGTGAGATCAAAATTGATTGA 1626 0.5166 MSLLTTSTIILFLFSFSFSFLTTTLSHNTTAFAFTFTFPSFALLNITLLGDSFLRDGVVGLTRSTPVPASSSGTLLYNHPIPTLPPSSLSTTFSFSITNTTSTSTLTFFLNSSRTLSLHLRPNQTHLALHLTTTASNFTQPNPASVHLNAANPITSWLDYHAHERKLNVFLNCSSPSSKPRNPTLSADLDLSDYFRDNLYVGFSGSTQGSTDLIRVMSWSFEFDSFQKPGLNLHPHNASRSPASVAVEDIPASSNSAEGNSKRFVIGVGAVVPAFFCVVLVFLGYVSYLKWRGVRKHESFGRCCPKEFGYREVKLATKGFHASRVIGKGSFGTVYKALFESSGTIAAVKRSRQYSHEGRTEFLAELSVIAGLRHKNLVQLLGWCVEKGELLLVYEFMPNGSLDKTDVFSYGVVVLEVACGRRPIEREGQKMVNLVDWVWGLHSQGRIIEAADRRLNWEFKEGEMKRLLLLGLSCANPDSAQRPSMRRVLQILNSEGVALVVPKVKPTLTFSSGLPLSLDEIVSDAEEEFSSAQVVCEIKID 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1090 541 SUPERFAMILY Protein kinase-like (PK-like) 308 506 IPR011009 -
Ssu9g1090 541 PANTHER - 403 524 - -
Ssu9g1090 541 PANTHER - 32 404 - -
Ssu9g1090 541 Gene3D - 31 118 - -
Ssu9g1090 541 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 403 524 - -
Ssu9g1090 541 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 32 404 - -
Ssu9g1090 541 Gene3D Transferase(Phosphotransferase) domain 1 394 498 - -
Ssu9g1090 541 Pfam Protein tyrosine and serine/threonine kinase 322 404 IPR001245 GO:0004672|GO:0006468
Ssu9g1090 541 ProSiteProfiles Protein kinase domain profile. 320 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1090 541 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Ssu9g1090 541 Gene3D Phosphorylase Kinase; domain 1 305 393 - -
Ssu9g1090 541 Gene3D - 119 264 - -
Ssu9g1090 541 Pfam Legume lectin domain 123 226 IPR001220 GO:0030246
Ssu9g1090 541 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 225 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1090 Ssu-Chr9 42487450 42489393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1090 392 535 Receptor kinase-like Gene Family AT5G55830 63.265 2.18e-49 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu9g1090 Lectin_legB 6.8e-18 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1090 - - gmx:100808744 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1090 9 42487450 42489393 Ssu9g1090 9 42487450 42489393 ECH