Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1089 ATGACTCTGCCCTTCTTCACCTTCTATAAATTCAGTAGTTGTACTTGGATACATTCAAGTCTCAGATTCAAGAATTCAACCTCAAAACCTgagttatttttaatcattaaggAAGAAAAGCTAGTTGTGTTTTCAGAGGCAATGGAGCATGGGGATTCCTTCTTTCACTATGATCAACATGCGAAATCAAGTTCTGGTTCAATCATCCCCATGCAACAAGCAAACACCTCTGCAAACATAGAAATTCCACCACACATCAACTCAAGCAACGGTGACCCAGTTCCCAATTTGGCTGTGCGAGACAAAAGCAAGATGCCAATTACAAATGTGACAAAAATAATGAGACAGACTCTTCCAAATAATGCAAAATTTTCAGATGGTGCCAAGGAGATGATTCAACAAAGTGCTACAAAGTACATAACCTTTGTGACTAGGAAAGCCAAGGAGCGATGTCAAAGCGAGTATAGAAAGATTTTGAATGCGGAGGACCTATTATGGGCCATAGAGAAGTTGGGCTTTGATGACTATGTTGGGCCTCTCACAACTTTCATGCAACGCTATCGTAACATTGAAGGAGGTGACCCCTTTACTCGCTGTGGGGAGCCCATTTCTTGCATTGACAACAATGGGTTGACTCTTGGGCCTGAGCCCAACCCTGTGCCCACCTTGGAGAGGCTTCCCCCTCCTTTACCACCACCAGTTCATTCTTCTGGGTCGGACTTTTCCATGGACCCAAACACAAATCTAGAAATGTTTGACCCAAATGATGTGAATGAGTTCTTCCTAGATGGATTTTGTGTTGATGGCTCAGACGATGCTTTCAACAACTTTGGCGCTTCCGCTCTCTTCAAGCATGATCAAGTGTGA 867 0.4256 MTLPFFTFYKFSSCTWIHSSLRFKNSTSKPELFLIIKEEKLVVFSEAMEHGDSFFHYDQHAKSSSGSIIPMQQANTSANIEIPPHINSSNGDPVPNLAVRDKSKMPITNVTKIMRQTLPNNAKFSDGAKEMIQQSATKYITFVTRKAKERCQSEYRKILNAEDLLWAIEKLGFDDYVGPLTTFMQRYRNIEGGDPFTRCGEPISCIDNNGLTLGPEPNPVPTLERLPPPLPPPVHSSGSDFSMDPNTNLEMFDPNDVNEFFLDGFCVDGSDDAFNNFGASALFKHDQV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1089 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 104 168 IPR003958 -
Ssu9g1089 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 94 194 - -
Ssu9g1089 288 PRINTS CCAAT-binding transcription factor subunit A signature 132 150 - -
Ssu9g1089 288 PRINTS CCAAT-binding transcription factor subunit A signature 151 169 - -
Ssu9g1089 288 PRINTS CCAAT-binding transcription factor subunit A signature 170 188 - -
Ssu9g1089 288 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 94 194 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu9g1089 288 Gene3D Histone, subunit A 98 195 IPR009072 GO:0046982
Ssu9g1089 288 SUPERFAMILY Histone-fold 104 194 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1089 Ssu-Chr9 42463605 42466952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1089 48 231 CCAAT-HAP3 Transcription Factor Family AT1G21970 41.379 1.09e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu9g1089 CBFD_NFYB_HMF 2.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1089 K08065 - tcc:18593281 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1089 9 42463605 42466952 Ssu6g3569 6 79317369 79317932 PCT