Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1084 ATGGAAAATTTTGCAGGTGAGGAGGAACATATCTTTTGTAGCCAATATTCACCTGTTCCTATCCCTAACAATGTGACATTGCCGGAATTTGTGCTCCAAAATGCTGAATTATATGCTAACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGATCACATATAGTGAGGTGGTAAGGGGTGTACATAGGTTTTCAAAGGCCTTAAGATCTCTCGGTCTAAGAAAAGGCCATGTTGTGATTGTAGTACTTCCAAATGTAGTAGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGAGGGGTGTTCTCAGGGGCAAATCCAACATCACATgtattagaaattaagaaacagGCAAAGTCTGCTGATGCCAAATTAATTGTAACAAACAACACAAACTATGAAAAGGTGAAGGGTCTAGAGTTACCTATCATTGTGCTGGGAGATGAAATTGTTGAAGGTGCTATGAATTGGAACAAATTGCTTGAAGCAGCAGATCGTGCAGGTGATGATTTGGCAAAGGAGCCTATTCAACAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTTACTCATAGAAATCTAGTGGCTAATCTTTGCTCTACACTCTCTGGTGTGAGCCCAGAAATGGTGGGGCTGGTCACTACACTAGGCTTGATTCCCTTTTTTCACATATATGGCATCACTGGAATATGTTGTGCCACTCTTAGGAGCAAAGGGAAAGTTGTGGTGATGGGAAGGTTTGAGTTGAAAACGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCAATTGTGCCCCCTATCATTCTCAGCTTGGTGAAAAATCCCATAGTGGATGAATTTGACCTTAGCAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCACCCCTTGCACCAGAACTCCTTAATGCTTTTGAACATAAGTTCCCTAGCATTGTTGTCACAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTCACTCATGCACAAAAAGGATTAGGAAGTCCTCATAAAAATTCAGTAGGGTTCATACTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTCCCAAGGAACACACCCGGGGAACTCTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAAGTGGATGAGACTGCCCAGACCATTGACAAGAATCGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTATTTATCATTGATCGTATCAAGGAGTTGATTAAATACAAAGGTTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATTTTGTTGAGTCATTCATCAATTGAAGATGCAGCTGTAGTGTCaTTACTAGATGAAAAGGCAGGGGAAATCCCGGCTGCAAGTGTTGTTTTGAGTCAAGGTGCAAAAGAGAGTGAGGAGGACATCATGAACTATGTTGCCTCCAATGTTGCACATTACAAGAAAGTGCGAGTGGTGCACTTTGTGGATGCCATACCAAAGTCACCCTCTGGGAAAATAATGAGGAGGCTCGTCAAAGAGAAGATGGTGGAAAAGATAAGACAAGCTCCTTAA 1629 0.423 MENFAGEEEHIFCSQYSPVPIPNNVTLPEFVLQNAELYANKVAFVDAVTGKGITYSEVVRGVHRFSKALRSLGLRKGHVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVLEIKKQAKSADAKLIVTNNTNYEKVKGLELPIIVLGDEIVEGAMNWNKLLEAADRAGDDLAKEPIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLSGVSPEMVGLVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILSLVKNPIVDEFDLSKLKLQAIMTAAAPLAPELLNAFEHKFPSIVVTEAYGLTEHSCITLTHAQKGLGSPHKNSVGFILPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNRWLHTGDIGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSIEDAAVVSLLDEKAGEIPAASVVLSQGAKESEEDIMNYVASNVAHYKKVRVVHFVDAIPKSPSGKIMRRLVKEKMVEKIRQAP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1084 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Ssu9g1084 542 SUPERFAMILY Acetyl-CoA synthetase-like 20 537 - -
Ssu9g1084 542 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Ssu9g1084 542 Pfam AMP-binding enzyme 33 440 IPR000873 -
Ssu9g1084 542 CDD 4CL 21 528 - -
Ssu9g1084 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 537 - -
Ssu9g1084 542 Gene3D - 436 539 IPR045851 -
Ssu9g1084 542 Gene3D - 9 435 IPR042099 -
Ssu9g1084 542 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 6 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1084 Ssu-Chr9 42341731 42345304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1084 7 535 Monolignol Biosynthesis Gene Families AT1G62940 71.563 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1084 K01904 - gmx:100811418 976.852