Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1080 ATGGACGAAGGCGAGGGAGGGTACGGTGAGGGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCCATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGACGACGATTACGAGGACCTTTACAACGACGTCAACGTCGGCGAAGGGTTCCTTCAATCGTTGCGCAAAAACGACGATTCGGGGTTACGAAACGACGACGTTGACGACAAGAAGCCGCCGTCGCCGCCACCGGTTCCGGATGCCGCCGGGGTTTCGATTCCGAGTGTCGGTGGCGGTGGAGagggtggcggtggtggtggaagCGGGGTTGTGGAATCTAGGGTTTCGGGGAGGGTTGATGGGTTTCAAAACCAAGGGTTTAGAGGGAACGAGGTGGGTGCCAAAGGTGGGATTAGGGTTGAATTAGGGCACCAATCTGGGAAATTGAGTGAAATTGAGGAGCAGGGTGGTAATGATCGTGCTGCAGTGCAGGGGATTGGGCAGCAACCACATGGTGGGGTTGTTGGGAGTGTGGGAAATGAGGGTTTGTTGAGGCAAGgtcaaggtggtggtggtggtggtggtggtagtggagGTGGAGGAGGAGGGAATGTTAATAGGGTTGGTGGAAATGGTGTTGGGAACAGTGTGAGTGCTGTTAGTAGTGTTAGTGCTGGAGGAGTtggaggaggtggtggtggtgctgcTTCTGGTGGTACTATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAACTGGAGGCTGACCTTAGTAAGTATGGGCCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAGTCGAAAGGGTATTGCCAGGTTGAGTTTTATGACCCTTCTGCTGCCACTGCTTGTAAGGAGGGGATGAATGGGCATGTTTTTAACGGGAGGCCGTGTGTTGTGGCGTTTGCGTCTCCTTTTACAGTTAAGAAAATGGGGGAAGCTCAGATAACTAGGAATCAGCAGATGAACCAATCTGCTGTTGCTCAGGGAGGAAGGAGGGGGCCTGCTGATGCAGGCGCTAAGACTGGTGGGAGTAATATTTCGACAGGTGGTAATTACCAAGGTGGAGAAGGGAATAGAGGTTATGGAAGAGGAGGAGGTAATTGGGGGAGAGGGAATAATCCTGCCATGGGGAATAGGGGGCCTGTTAATCCAATGAGGAACAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGATTTGGACAGGGTATTGGTGGTACCCCTCCACTGATGCATCCTCAATCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCCGGTGCTCCTACGCCTCCGTTCTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTCGGAAGAGGGATGCCTGTGAATGGTATGGGGATGATGCCCACATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCTAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAAAAAGATAGAGGTTCAGAAAGGGACTGGTCCGGTTCTTCTGAGCGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCCAGAGAAAAAGATATGGGCCATGACCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAATGGGCAGAGAACGATCTCGTGATCGTGACCGTGAACGATCTCGAGACCGTGATCGTGACCGCGAAAGGGATCGAGACCGTGAGCGTGACAGGCACAGAGAAGATAGGGACAGGTATGCAGATCATCATAGGTACAGAGACCGAGAAGCGGAGCACGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAGTCACGATTATCTCAAGAGGAGGAACACCATTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGGAGGCTTGCTTCTGAATAA 2118 0.4986 MDEGEGGYGEGGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGLRNDDVDDKKPPSPPPVPDAAGVSIPSVGGGGEGGGGGGSGVVESRVSGRVDGFQNQGFRGNEVGAKGGIRVELGHQSGKLSEIEEQGGNDRAAVQGIGQQPHGGVVGSVGNEGLLRQGQGGGGGGGGSGGGGGGNVNRVGGNGVGNSVSAVSSVSAGGVGGGGGGAASGGTILFVGDLHWWTTDAELEADLSKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQITRNQQMNQSAVAQGGRRGPADAGAKTGGSNISTGGNYQGGEGNRGYGRGGGNWGRGNNPAMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLMHPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDHEWSERRHRDDREMGRERSRDRDRERSRDRDRDRERDRDRERDRHREDRDRYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLASE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1080 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Ssu9g1080 705 SUPERFAMILY RNA-binding domain, RBD 234 321 IPR035979 GO:0003676
Ssu9g1080 705 MobiDBLite consensus disorder prediction 336 366 - -
Ssu9g1080 705 CDD RRM_CFIm68_CFIm59 238 311 - -
Ssu9g1080 705 SMART rrm1_1 237 310 IPR000504 GO:0003723
Ssu9g1080 705 Gene3D - 231 384 IPR012677 -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 61 76 - -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 176 205 - -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 506 705 - -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 1 109 - -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 544 705 - -
Ssu9g1080 705 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 704 IPR034772 -
Ssu9g1080 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
Ssu9g1080 705 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 704 - -
Ssu9g1080 705 MobiDBLite consensus disorder prediction 31 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1080 Ssu-Chr9 42241880 42243997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1080 214 312 Eukaryotic Initiation Factors Gene Family AT4G34110 29.293 2.35e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1080 K14398 - gmx:100813748 945.651