Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1060 ATGCCTTCCACCAAGAGAAAATCTTGCATTGAAGCACCCGATGATGAAAGGAAGAGAGCCCGcataatgaaaaagaagaaacaagaagAGAGATGTTGGGGCTACTCAACAGATTTGATGCTTTATGATGACCCATGGAAGATCAAGAAAGAGCTCACAAAGAGTGACCTTGGCAACCTAAGTAGACTCTTGCTGCCCAAAGAATTGATAGAGGACTTGGTGCTGCCCGTGTTGAGCCTTGAATCCCAAAGAGAGGCTAAGAATGAAAAAGGAACCAAAATTATGATTTGGGATGTGGATACCCAATCCATGCACCATCTTGTCTTCAAGTTTTGGGCCTCTTCAAAAAGCTATGTTTTCATTGACAATTGGACTAAAGATTTTGTGAATAGAAGGAGTTTGAAGATAGGAGATGAAATTGGATTTCATTGGGATGCATACAATAATCGGTTTGATTTTTCTGTTCTTGTTCGTGCTTAG 480 0.3896 MPSTKRKSCIEAPDDERKRARIMKKKKQEERCWGYSTDLMLYDDPWKIKKELTKSDLGNLSRLLLPKELIEDLVLPVLSLESQREAKNEKGTKIMIWDVDTQSMHHLVFKFWASSKSYVFIDNWTKDFVNRRSLKIGDEIGFHWDAYNNRFDFSVLVRA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1060 159 CDD B3_DNA 46 156 IPR003340 GO:0003677
Ssu9g1060 159 Pfam B3 DNA binding domain 50 155 IPR003340 GO:0003677
Ssu9g1060 159 Gene3D - 45 155 IPR015300 -
Ssu9g1060 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 158 - -
Ssu9g1060 159 SUPERFAMILY DNA-binding pseudobarrel domain 44 156 IPR015300 -
Ssu9g1060 159 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1060 Ssu-Chr9 41860436 41860915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1060 35 142 B3 DNA Binding Superfamily AT1G25560 31.193 8.40e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu9g1060 B3 9.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1060 - - gsj:114396848 253.832