Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1058 ATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTAGATGCTGCAAGGACTACCAATGCTAAAACTATGGGTCCTGTGCCGTTACCAACTAAGAAGCGAATCTACTGCGTTCTTAAATCCCCACACGTGCATAAGGATGCTCGGTTTCATTTCGAGATCAGAACTCATCAGCGTCTCATCGATATTCTATATCCTACAGCTCAAACCATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAG 312 0.4423 MAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1058 103 Pfam Ribosomal protein S10p/S20e 8 102 IPR027486 -
Ssu9g1058 103 Gene3D Ribosomal protein S10 domain 1 103 IPR036838 -
Ssu9g1058 103 PRINTS Ribosomal protein S10 family signature 6 19 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 PRINTS Ribosomal protein S10 family signature 41 56 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 PRINTS Ribosomal protein S10 family signature 62 76 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 PANTHER BNAC05G40270D PROTEIN 1 103 - -
Ssu9g1058 103 SUPERFAMILY Ribosomal protein S10 6 103 IPR036838 -
Ssu9g1058 103 TIGRFAM rpsJ_bact: ribosomal protein uS10 5 102 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 Hamap 30S ribosomal protein S10 [rpsJ]. 4 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu9g1058 103 SMART Ribosomal_S10_2 8 102 IPR027486 -
Ssu9g1058 103 ProSitePatterns Ribosomal protein S10 signature. 30 45 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1058 Ssu-Chr9 41846463 41846774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1058 6 103 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.313 2.65e-09 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1058 K02946 - qsu:111986192 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1058 9 41846463 41846774 Ssu9g1058 9 41846463 41846774 ECH