LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1053	ATGGATCTTCAGATCCTCTATTTTGCatcctttttctcctttttcatttttatgtttatggTACACAAAATAGTGACCAAAAAATTTGACTCAACTCCAAATTTACCGCCAGGGCCATGGAAGTTACCTGTTATAGGGAACATACACAACCTTGTTGGCTCACTTCCCCATCACCGGCTAAGAGATTTATCAGCAAAATATGGACCCTTGATGCATTTGAAGCTTGGAGAGGTTTCTACCATTGTGGTTTCATCCCCGGAGTATGCTAAGGAGGTGTTGAAAACCCATGATCTTATCTTTGCATCAAGGCCTCATGTTCTAGCCTCAAAGATAATGAGTTATGATTCTCTAGATATAGCTTTTGCACCTTATGGTGATCACTGGAGACAGCTAAGGAAGATTTGTGCGTTGGAGCTACTAAGCTCAAAACGTGTCCAATCTTTCCAACCAATCAGAGAAGAAGTGCTCACTAATTTCATCAAACGGATTGCTACAAAAGAAGGATCTCCTGTTAACCTTACCAACGAGGTGAtttcaacaatatttacaaTCACCTCAAGAACTGCCCTTGGCAACAAGTGCAGGCACCATCAAAAGTTAATATCAGTGGTAAAGGAAACCACAGAGGCTGCTGGAGGTTTTGACTTGGGAGATTTGTACCCTTCTGCTAAATGGCTTCAACACATCTCTGGGTTGAAGCCTAAGCTTGAGAAGTTGCATCAACAAGCTGACCAGATAATGAAAAACATCATCAATGAGCATAGAGAGGCCAAGTCAAGCGCCACAGAGGACCAGGAAGAAGGCGAAGTTCTTTTGGATGTGCTCTTGAAGCATCTGTTTTGCTTAAGTGATGATAGTGTCAAGGCTGTGATCTGGGATATCTTTGGGGGTGGAAGTGATACATCATCTGCTACCATAACATGGGCAATGGCAGAGATGATAAAAGATCCAAGAGTAATGAAGAAGGTACAAGCTGAGGTAAGAGAGGTATTCAACAAAGAAGGAAAGCCCAATGAAAGTGGCATAGAGAAACTGAAATATTTGAAATCTATTGTAAAAGAGACATTAAGATTACACCCTCCTAGTCCTCTTCTGCTTCCAAGAGAGTGTGGACAAGCTTGTGAGATCAATGGGTATCATATACCTGTGAAAAGCAAGGTCATAGTTAATGCTTGGGCAATTGGAAGAGATCCAAAGCACTGGACTGAGGCAGAGAGGTTTTATCCTGAGAGGTTCATTGAAAGTTCTGCTGACTACATAGGCAATAATTTTGAGTTCATTCCATTTGGTGCTGGAAGAAGGATATGCCCTGGCCTCACATTTGGCTTGATCACCGTTGAGTATGCACTTGCATTATTGATGTATCATTTTGATTGGAAACTTCCCAATGGAATGTACAATGAAGATTTGGACATGACTGAGATATTTGGAATAACAGTTAGCCGAAAAGATTTATACCTGATTCCCAGAACTTGTCATCCTTAG	1485	0.4027	MDLQILYFASFFSFFIFMFMVHKIVTKKFDSTPNLPPGPWKLPVIGNIHNLVGSLPHHRLRDLSAKYGPLMHLKLGEVSTIVVSSPEYAKEVLKTHDLIFASRPHVLASKIMSYDSLDIAFAPYGDHWRQLRKICALELLSSKRVQSFQPIREEVLTNFIKRIATKEGSPVNLTNEVISTIFTITSRTALGNKCRHHQKLISVVKETTEAAGGFDLGDLYPSAKWLQHISGLKPKLEKLHQQADQIMKNIINEHREAKSSATEDQEEGEVLLDVLLKHLFCLSDDSVKAVIWDIFGGGSDTSSATITWAMAEMIKDPRVMKKVQAEVREVFNKEGKPNESGIEKLKYLKSIVKETLRLHPPSPLLLPRECGQACEINGYHIPVKSKVIVNAWAIGRDPKHWTEAERFYPERFIESSADYIGNNFEFIPFGAGRRICPGLTFGLITVEYALALLMYHFDWKLPNGMYNEDLDMTEIFGITVSRKDLYLIPRTCHP	494

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu9g1053	494	Coils	Coil	236	256	-	-
Ssu9g1053	494	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	429	438	IPR017972	GO:0005506\|GO:0016705
Ssu9g1053	494	Pfam	Cytochrome P450	36	479	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	PRINTS	P450 superfamily signature	427	436	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	PRINTS	P450 superfamily signature	350	361	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	PRINTS	P450 superfamily signature	297	314	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	SUPERFAMILY	Cytochrome P450	36	489	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	Gene3D	Cytochrome P450	26	491	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	PRINTS	E-class P450 group I signature	426	436	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu9g1053	494	PRINTS	E-class P450 group I signature	88	109	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1053	Ssu-Chr9	41561197	41566119	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1053	4	489	Cytochrome P450	AT3G26300	41.036	8.76e-133	392

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1053	-		K13267	gmx:100814284	805.823

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu9g1053	9	41561197	41566119	Ssu9g1053	9	41561197	41566119	ECH

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