Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1050 ATGTCGTTTGTCTTATCACTCCACTCTCTTAGACACTTTGGCAGTACATTTTTGGTGAAGCCGGTTTTCATGCATGGCTTATCTGGTTTCCTTCATCTGCTGTTGTTAGTGATGCTTTTAGTGTCACTGGTGTGGAAGAAAGTCGTAGTTGGAGCCAGAGAAAGTTCCAAAGAGAACATTAATAACACCTTTTCTTCAAGGATTTTGCTTTGTTCTCTGGTTGTTTCTGCTTTCAATCTTCTACTCTTTTTGTTTGATTACTTTTGTTGGTATAGAAATGGTTGGTCAGCAGAAAAGCTTGTGACCCTTTTGGATTTGGTGCTCAAAACCGTTGCTTGGGGTGTTGGTGGTGTTTGCATGCAAAGGGAACTCTTCATTTCAAGGGAAAGAAGATTGTCATTCTTCTTCAGAGCTTGGTGCGTCCTCTTCCTCTTTGTTTCCGGTTATTGCTCGATAGTGGACATTGTTCTCTATGCAAAGCATGCTGCTGTGCCTATTCAGTGTTTAGTTTCTGATGTTTTCTCTGTTTGTGTGGGTTTGTTCTTCTGTTACTTgggaatttttggaaaaaatgaggGTGGAGTAGGGGATAGTACACTTCAAGAATCTCTTCTGAATGGTGATTCAAAAGATAGAAATGTGTTTGGGACAAAAGAGATCAAGGGGGTTGACACTGTTACCCCTTACTCTAGTGCTGGAATTTTTGGTCTTCTTACCTTCTCCTGGGTTGGTCCTCTGATTGCTGTTGGCAAGAAGAAGACTTTGGACCTTGAGGATGTCCCCCAACTTGACAAAAGAGACAGTTTAGTTGGAGCTTTTCCAACTTTTAGGGATAACCTTGAGGCATGTTGTGGAGCAAGTAACAAAGTGACCACACTTAAGTTAGTGAAGTCATTAGTATTCTCAACCTGGAAAGAGATTGCTTTCACAGCTATCCTTGCATTGGTAAACACATTGGCCTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCAATACCTTAATGGAAAACGGCAATTTGAAAATGAGGACCTTGTTTTGGTGTCTGCATTTTCTGTGGCAAAACTTGTGGAGTGCTTAACGCACAGGCAATGGTTCTTTAGGTTGCAGCAGGTTGGAATACGAATGCAAGCGCTGCTTGTGACGATCATATATAACAAAGCTTTGAACCTTTCATGTCAATCCAAGCAAGGCCACACTACTGGGGAAATAATCAACTTCATGAGTGTTGATGCAGAAAGAGTTGGTGAGTTCAGTTGGCACCTACATGATCTGTGGTTGGTAGTTCTACAGGTTTTAGTAGCCTTGTTGATTTTGTATAGAAATCTTGGGCTTGCTTCAATTGCTGGCTTTGTTGCAATTCTCATTGTAATGTGGGCAAACATTCCCTTGGGTTCAACCCAAGAGAAGTTTCAAAACAAGTTGATGGAGTCAAAAGATGCAAGAATGAAAGCAACATCTGAGATTTTAAGGAACATGAGGATCCTCAAACTGCAAGGATGGGAAATGAAGTTTTTGTCTAAGATAACTGAACTCCGGAAGATAGAGCAAGGTTGGTTGAAGAAATTTATATACACTTTAGCCATGATTATATTTGTGTTTTGGTGTGCCCCAGCATTTGTGTCAGTGGTTACTTTTGGTACTTGTTTGCTTATAGGGATCCCCCTTGAATCAGGGAGGATCTTATCTGCTCTTGCAACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATTTCAATGATGGCACAAACTAAGGTTTCTCTTGACAGGATTGCATCTTTTCTTCGTCTCGATGAGATGCAATCTGATGTTGTGGAGAAGCTTCCACCGGGTAGTTCTAATATAGCAATTGAAGTAGTGGATGGAAATTTCTCTTGGGATTTATTTTCCCCTAATACAACATTGCAAAACATAAATCTCAGGGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGCACTGTTGGGTCAGGCAAGTCTACTTTACTTTCTAGTATATTGGGAGAAGTACCAAAGAAATCAGGGGTCCTTAAGTTGTGTGGAACAAAGGCTTATGTAGCTCAGTCACCATGGATACAAAGTAGCAAGATAGAtgataatatattgtttggaaaGGATATGGAAAGGGAAAGGTATGAGAGGGTCCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATATTTTGTCATTTGGAGATCAGACTATTATAGGAGAGAGGGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATACCAAGATACCGATATATATCTGTTTGATGATGTGTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTATTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTTTTACCTGCTGCTGACCTTATCTTGGTCATGAAAGATGGGAAAATTACTCAATGTGGAAAATATAATGATCTGCTCAACTCAGGCACTGATTTTATGGAACTTGTTGGCGCTCATAAAGAAGCTTTGTCTGCACTTGATTCATTAGATGGAGGGACAGTATCTGATAAAATAAGTGTCTCTCTTTCTCATGGTGCTGGAGATGAAGAAGTAAAGAAAGATGTGCAAAATGGTGGAAAAGATGACAAATGTGATCCAAAAGGCCAACTtgttcaagaagaagaaagggagaAAGGCTTCTACTGA 2727 0.3931 MSFVLSLHSLRHFGSTFLVKPVFMHGLSGFLHLLLLVMLLVSLVWKKVVVGARESSKENINNTFSSRILLCSLVVSAFNLLLFLFDYFCWYRNGWSAEKLVTLLDLVLKTVAWGVGGVCMQRELFISRERRLSFFFRAWCVLFLFVSGYCSIVDIVLYAKHAAVPIQCLVSDVFSVCVGLFFCYLGIFGKNEGGVGDSTLQESLLNGDSKDRNVFGTKEIKGVDTVTPYSSAGIFGLLTFSWVGPLIAVGKKKTLDLEDVPQLDKRDSLVGAFPTFRDNLEACCGASNKVTTLKLVKSLVFSTWKEIAFTAILALVNTLASFVGPYLIDGFVQYLNGKRQFENEDLVLVSAFSVAKLVECLTHRQWFFRLQQVGIRMQALLVTIIYNKALNLSCQSKQGHTTGEIINFMSVDAERVGEFSWHLHDLWLVVLQVLVALLILYRNLGLASIAGFVAILIVMWANIPLGSTQEKFQNKLMESKDARMKATSEILRNMRILKLQGWEMKFLSKITELRKIEQGWLKKFIYTLAMIIFVFWCAPAFVSVVTFGTCLLIGIPLESGRILSALATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEMQSDVVEKLPPGSSNIAIEVVDGNFSWDLFSPNTTLQNINLRVFHGMRVAVCGTVGSGKSTLLSSILGEVPKKSGVLKLCGTKAYVAQSPWIQSSKIDDNILFGKDMERERYERVLEACCLKKDLDILSFGDQTIIGERGINLSGGQKQRIQIARALYQDTDIYLFDDVFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHKEALSALDSLDGGTVSDKISVSLSHGAGDEEVKKDVQNGGKDDKCDPKGQLVQEEEREKGFY 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1050 908 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Ssu9g1050 908 CDD ABCC_MRP_domain1 622 822 - -
Ssu9g1050 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 844 IPR027417 -
Ssu9g1050 908 Pfam ABC transporter 640 773 IPR003439 GO:0005524
Ssu9g1050 908 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Ssu9g1050 908 Gene3D ABC transporter type 1, transmembrane domain 295 597 IPR036640 GO:0005524|GO:0016021
Ssu9g1050 908 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 845 IPR003439 GO:0005524
Ssu9g1050 908 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 82 906 - -
Ssu9g1050 908 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1050 908 MobiDBLite consensus disorder prediction 873 908 - -
Ssu9g1050 908 Pfam ABC transporter transmembrane region 310 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1050 908 Gene3D - 598 856 IPR027417 -
Ssu9g1050 908 SUPERFAMILY ABC transporter transmembrane region 298 603 IPR036640 GO:0005524|GO:0016021
Ssu9g1050 908 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 906 - -
Ssu9g1050 908 SMART AAA_5 649 822 IPR003593 -
Ssu9g1050 908 MobiDBLite consensus disorder prediction 871 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1050 Ssu-Chr9 41486639 41490174 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1050 622 868 Calmodulin-binding Proteins AT2G36910 29.963 1.36e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1050 - K05666 gmx:100776443 1500.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1050 9 41486639 41490174 Ssu9g1050 9 41486639 41490174 ECH
Ssu6g3552 6 79095110 79100856 Ssu9g1050 9 41486639 41490174 PCT