Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1048 atggaTTTCAATATTCTGGTTTCTTGCGCTACAAAGATAGTATGGTTTGTAGAGGAGCTTGTCACACTTTCTGATTTGGCTCTCAAAACAGTTGCTTGGGGTGCTGTTCGTGCTTATTTACATTCTAGAAACTCCAAGGCACAGGATCCGAGTTCCCCATGTTTGTTGAGAATTTGGTGCTGGGTCTATGCCTTTGTTTCTTGTTCTTGCCTTGTTGTAGACTTTGTAGTCTATGGAAAGCATGTTTACTTGCCAATCGTATACCTTTCTGATGTAGGTTCCTCTGTTACGGGTTTATTTCTATGTTATGTGGGATGTTCTGTTAACAATATGGCTAAGCTTGCCCCTCATGAAGAGGCCCTTCTGAATGGTGACTATAGTGTGAGCAACAATTCTGATCCCAGTAAGACTAGaggaaatgaaaatttaacccGTTATTCAAATGCTGGATTCTTCAGCATTCTTACTTTCTCATGGATCAGTCCATTAATAACTCTAGGGAATGAGAAGACTTTAGAGCACGAGGACCTCCCACTTCTTGCTACTGATGACGGTGCCTATGGGGTTTTTCCAACTTTTAGAAGCAAACTTGGGTCAGAGGATGGAAGTGTTAGGAGAGTGACCACTCTCAAGCTGGTGAAGGTGTTATTCTTGTCAACATGGCAAGGGATCCTTTTATCAGGTTTATTTGCATTCCTTTATGCATGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCCTTGTTCAATACCTCAGCGGGGAACACAAGTTTAAAAATGAGGGCTATGTTTTGGCCACGGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCAATGAGGCACTGGAGGTTTAGGTTCCAGCAGGTTGGGGTTAGGGTGCAATCAGAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAATCAAAGGAGGTTCATAGCACCGGGGAAATCATCAACTTAATGACTGTTGATGCTGCAAGGATTGGTGAATTTTGTTGGTTCATGCATGATCCGTGGATGTGTGTTTTGCAAGTTGCTTTGGCCTTGTTAATTCTCTATAGAAGTGTAGGGGTTGCTTCAATTGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGCTATCATTGCAAGAAAAGTTCCAAGGCAAGGTAATGGAgttcaaagataaaagaatgaaGGCTATGTCTGACATTCTGAAGAACATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTACTCAGCTTAGGAATACTGAGGAGATATGGCTTAAGAAATTTCTAGTTGGTACGACAATTGTTAGATTTCTCTTCCATAATGCCCCAACTTTTATTGCTGTGGTTACATTTGGTGCTTGTGTTTTTATGGGAATCCCACTTGAATCAGGGAAGGTCATATCTGCACTTGCAACATTCAGAATTCTTAAAACGCCCATCTATTATCTTCCTGAAACGATTTCAATGATTGCACAAACTAAGGTTTCCCTTGAAAGGATTGCATCATTTCTTTGTCTCGATGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCATGGGTTAGTTCTGATAAGGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCCCCTAATACAACATTGACAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATATTAGGGGAAGTACCAAAGATATCTGGGACCCTGAAGGTATGTGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGAAAGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGATGTATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTGTTGGAGAGAATGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTCCAAATAGCCCGTGCTCTATATCAAGATGCTGATATATATCTGTTTGATGATCCCTTCAGTGCCGTGGATGCTCATACAGGATCCCATCTCTTTAACGTACTATTTTTTCTAAACTCTACTGTTTTCAAGTATATTGTGAACAGCTATAGCCTCACGGAATTggattcttctttttttctgtaA 2199 0.3952 MDFNILVSCATKIVWFVEELVTLSDLALKTVAWGAVRAYLHSRNSKAQDPSSPCLLRIWCWVYAFVSCSCLVVDFVVYGKHVYLPIVYLSDVGSSVTGLFLCYVGCSVNNMAKLAPHEEALLNGDYSVSNNSDPSKTRGNENLTRYSNAGFFSILTFSWISPLITLGNEKTLEHEDLPLLATDDGAYGVFPTFRSKLGSEDGSVRRVTTLKLVKVLFLSTWQGILLSGLFAFLYACASYVGPFLIDILVQYLSGEHKFKNEGYVLATAFVAAKLVECLSMRHWRFRFQQVGVRVQSELVAMIYAKGLTLSCQSKEVHSTGEIINLMTVDAARIGEFCWFMHDPWMCVLQVALALLILYRSVGVASIAALAATVIVMLLNLPVLSLQEKFQGKVMEFKDKRMKAMSDILKNMRILKLQAWEMKFLSKITQLRNTEEIWLKKFLVGTTIVRFLFHNAPTFIAVVTFGACVFMGIPLESGKVISALATFRILKTPIYYLPETISMIAQTKVSLERIASFLCLDELQTDVVEKLPWVSSDKAIELVDGNFSWDLSSPNTTLTNINLTVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKVCGTKAYVSQSPWIQSGKIEDNILFGKEMDREKYEKVLDVCSLTKDLEVLPFGDQTIVGENGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFNVLFFLNSTVFKYIVNSYSLTELDSSFFL 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1048 732 Pfam ABC transporter 557 691 IPR003439 GO:0005524
Ssu9g1048 732 Pfam ABC transporter transmembrane region 225 486 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1048 732 Gene3D - 522 728 IPR027417 -
Ssu9g1048 732 Gene3D ABC transporter type 1, transmembrane domain 197 521 IPR036640 GO:0005524|GO:0016021
Ssu9g1048 732 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 225 505 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1048 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 539 731 IPR003439 GO:0005524
Ssu9g1048 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 709 IPR027417 -
Ssu9g1048 732 CDD ABCC_MRP_domain1 539 704 - -
Ssu9g1048 732 CDD ABC_6TM_ABCC_D1 226 513 IPR044746 GO:0140359
Ssu9g1048 732 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524
Ssu9g1048 732 SMART AAA_5 566 730 IPR003593 -
Ssu9g1048 732 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 115 718 - -
Ssu9g1048 732 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 115 718 - -
Ssu9g1048 732 SUPERFAMILY ABC transporter transmembrane region 220 517 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1048 Ssu-Chr9 41445091 41447364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1048 539 698 Calmodulin-binding Proteins AT2G36910 33.908 1.59e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1048 - K05666 gmx:106794105 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1048 9 41445091 41447364 Ssu9g1048 9 41445091 41447364 ECH