Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1045 ATGTTCTTACTCTTTCCTCACTACTCTTCCTCCATGATGCACCATGGAAATGATTTTCTCCTCCAACCCTTTTTCACACGTGGGGTATCTGCTTCACTCCACCTAGTCTTGTTTCTTGTCCTTGTTGTGTCTTGGGTATGGAAGAAAGTGCAAGTGGACCATAGAGAAAAGATTGAGAGAAATGGATTCCATAATTCTGGTCTCTTGTACTACAAACACAGTCTGGTTTGTAGCTTAGTTATTTGTGTGTTCAACCTTGTGTTATGCTTACTAAGCTACTTTTACTTGTATAACCATGATGGTTTAGAAGAGCATGTCACACTTTCTGACTTGGCTCTCAAAACAGTTGTTTGGGGTGCTGTTTGTGCTTATTTACATTCTAGAGACTCCAAGGCACAGGATCCGAGTTTCCCATGTTTGTTGAGAATTTGGTGCTGGGTCTATGCCTTTGTTTCTTGTTCTTGCCTTGTTATTGACTTTGTAGTCTATGGAAAGCATGTTTTCTTGCCAATTATATACCTTGTTTCTGATATAGGTTCCTCTATTACGGGTTTATTTCTATGTTATGTTGGATGTTCTGTTAACAACATGGCTAAGCTTGCCCCTCTTGAGGAGGCCCTTTTGAATGGTGACTCTAGTGTAACCAACAATTCTGATCCCAATAAGACTAGAcgaaatgaaaatttaacccGTTATTCAAATGCTAGACTTTTCAGCATTCTTACTTTCTCATGGATCAGTCCATTAATAACTCTAGGGAATGAGAAGACTTTGGACCATGATGATCTCCCACTTCTTGCTACCAAGGACAGTGCCTATGGGGTTTTTCCAACATTTAGAAACAAACTTGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGTGAAGGTGTTATTCTTGTCAGCATGGCAAGGGATCCTTTTATCAGGTTTATTTGCATTTCTATACACATGTGCTTCTTATGTTGGACCCTTTCTTATTGACACCCTTGTTCAGTACCTCAATGGGGAACACAAGTTTAAAAATGAAGGCTATGTTTTGGCTGTGGCATTTGTCGCTGCAAAGCTTGTGGAGTGTCTTTCTGAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGATTGACTCTTTCATGCCAATCAAAGGAGGGTCGCAGCACCGGGGAAATCATTAACTTAATGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTTGGTACATGCATCAACCATGGATGTGTGTTCTGCAAGTTGCTTTGGCCCTGTTAATTCTGTATAGAAGTGTAGGGGTTGCTTCTATTGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGTAAGGTAATGGAGTTCAAAGACAAAAGAATGAAGGCTACGTCTGAGATTCTGAAGAATATGATGATACTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGACTGAGGAGATATGGCTAAAGAAATTTGTAGTTGGTACAGCAATTGTTAGATTTCTCTTCCATAACGCCCCAACTTTTATTGCTGTGGTTACTTTTGGGACTTGTGTTCTTATAGGCATCCCACTTGAATCAGGGAAGGTATTATCTGCACTTGCAACATTCAGAATTCTTCAGATGCCCATCTATGGTCTTCCTGATACGATTTCAATGATTGCACAAACTAAGGTTTCCCTTGAGAGGATTGCATCATTTCTTCGTGAAGATGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCATGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATACAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTGTGTGGTACTGTTGGATCAGGTAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCAAAGATATCTGGGACACTGAAGACCTGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGACAACATATTATTTGGTAAAAAGATGGACAGGGAAAAGTATGAGAAGGTTCTAGAAGCATGTTCCTTGAACAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTTTTAGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTaaggaaaaaagaagggaaGCTTGACTCCATAGGGTTGATTGAGGAATATGATTCACCAAAGAAACTGCTCAAGAACAAATCTTCATCTCTTGCTCAACTAGTCGCAGAATACACAAGAAGGTCAAACTCTggttttggaaattaa 2547 0.3954 MFLLFPHYSSSMMHHGNDFLLQPFFTRGVSASLHLVLFLVLVVSWVWKKVQVDHREKIERNGFHNSGLLYYKHSLVCSLVICVFNLVLCLLSYFYLYNHDGLEEHVTLSDLALKTVVWGAVCAYLHSRDSKAQDPSFPCLLRIWCWVYAFVSCSCLVIDFVVYGKHVFLPIIYLVSDIGSSITGLFLCYVGCSVNNMAKLAPLEEALLNGDSSVTNNSDPNKTRRNENLTRYSNARLFSILTFSWISPLITLGNEKTLDHDDLPLLATKDSAYGVFPTFRNKLESECGSVRNVTTLKLVKVLFLSAWQGILLSGLFAFLYTCASYVGPFLIDTLVQYLNGEHKFKNEGYVLAVAFVAAKLVECLSERHWMFRFQQVGVRMQSKLVAMIYAKGLTLSCQSKEGRSTGEIINLMTVDAERIGEFCWYMHQPWMCVLQVALALLILYRSVGVASIAALAATVIVMLLNLPVASLQEKFQGKVMEFKDKRMKATSEILKNMMILKLQAWEMKFLSKIIQLRKTEEIWLKKFVVGTAIVRFLFHNAPTFIAVVTFGTCVLIGIPLESGKVLSALATFRILQMPIYGLPDTISMIAQTKVSLERIASFLREDELQTDVVEKLPWGSSDKAIELVDGNFSWDLSSPNTTLKNINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKTCGTKAYVSQSPWIQSGKIEDNILFGKKMDREKYEKVLEACSLNKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKALDMCQLGDEVRKKEGKLDSIGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGN 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1045 848 CDD ABCC_MRP_domain1 625 790 - -
Ssu9g1045 848 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Ssu9g1045 848 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Ssu9g1045 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 793 IPR027417 -
Ssu9g1045 848 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1045 848 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 201 790 - -
Ssu9g1045 848 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1045 848 SUPERFAMILY ABC transporter transmembrane region 306 604 IPR036640 GO:0005524|GO:0016021
Ssu9g1045 848 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Ssu9g1045 848 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 201 790 - -
Ssu9g1045 848 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 836 IPR003439 GO:0005524
Ssu9g1045 848 SMART AAA_5 652 829 IPR003593 -
Ssu9g1045 848 Gene3D - 619 803 IPR027417 -
Ssu9g1045 848 Gene3D ABC transporter type 1, transmembrane domain 282 608 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1045 Ssu-Chr9 41352081 41358285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1045 604 826 Calmodulin-binding Proteins AT2G36910 30.279 6.51e-19 90.5