Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1042 ATGAACCCTGTTGATTGGGAACAAGAACTGAAAAAGTATCAGGATGTTATAGCTTCAGGTACCAAGTGTATGAAAATAAAGGCTATGGTGATACTGGCTCGTTTCTCCAAACATGCCCCTGAGCATGTGTTGGCTCGCAGCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGATTCTGGTCCATCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGAGTTGGCAGTTGAGATTGGTGGACATGGTGCCAATCATTCTTTGATGAGGTTGTTGCCTCATTCTGATGGAAGGATGCAGAAGGTCCTGATAAAATGTTTGCTGGTTATTGTTAGCTTTTGCAATGCAAGTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAAATGATCATTGGTTTGTTGAGTTCTTGCACCGATTATACTAGGAGGTATTTGTTGGAGATTTTGAGCGTGTTGGCGTTGAGGAGGGATGTTAGGAAGGCTCTCACTAGGCTAAGGGCGCTTCGTTATGTCGTGGAGGCTGCTGGTTTTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACGAGACAGGCTAGGCGTGCACTGGTTGAATTGGGAGCGATACCGGTGCTTGTGGCGTTGTTTCGTGATGGAGATCACACCACAAAGCTTGTAGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTATATTAGGCCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCATCTGGGAAGGAGATAGCTGAGGATGTGTTTTGCATATTGGCTGTTGCGGAGGCTAATGCTGTTGAAATTGCTGGGCACTTGGTGAGGATTCTGAGAGATGGTGATGATGAAGCAAAGGCTTCTGCAGCTGATGTGATGTGGGATCTGTCAGGTTACAAGCACTCAACGTCTGTGGTCCGGGACTCGGGTGTGATTCCTATTCTTGTTGAGCTTTTGGGGAGCGGAAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTAAGCTATGAGGGAACTGATAGAATGGCACTTGCTGAGGCAGGGGCAATTGCGATTCTCATTGACTTGatgaatgatgttgatgaggttgAGGAACTAAGGGATAATGCTGCAGAGGctcttgttaatttttatgaagatCCATTGTATCATGATAGAGTGTCTGATGCAATTAATGTTCCTTCGTTCAGTGATATGCAGAATAGATTAATTCATATTCGTGCATCGAATGAGCATATGGCTAGATCCTTGCGAAGAATGAGTGTTGAGCAGCTCACTTGGAACCCAGATCTTGTATGA 1386 0.4481 MNPVDWEQELKKYQDVIASGTKCMKIKAMVILARFSKHAPEHVLARSIPILTEILGHNVSNDSGPSLQEAAAYCLKCIACRGDGELAVEIGGHGANHSLMRLLPHSDGRMQKVLIKCLLVIVSFCNASRTVVATNGGVEMIIGLLSSCTDYTRRYLLEILSVLALRRDVRKALTRLRALRYVVEAAGFGSMVSRERACQAIGLLGVTRQARRALVELGAIPVLVALFRDGDHTTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILRDGDDEAKASAADVMWDLSGYKHSTSVVRDSGVIPILVELLGSGSEDVKVNVSGAFAQLSYEGTDRMALAEAGAIAILIDLMNDVDEVEELRDNAAEALVNFYEDPLYHDRVSDAINVPSFSDMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1042 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Ssu9g1042 461 SUPERFAMILY ARM repeat 299 418 IPR016024 -
Ssu9g1042 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 3 460 - -
Ssu9g1042 461 SUPERFAMILY ARM repeat 16 322 IPR016024 -
Ssu9g1042 461 SMART arm_5 207 247 IPR000225 GO:0005515
Ssu9g1042 461 SMART arm_5 325 365 IPR000225 GO:0005515
Ssu9g1042 461 SMART arm_5 125 165 IPR000225 GO:0005515
Ssu9g1042 461 SMART arm_5 35 80 IPR000225 GO:0005515
Ssu9g1042 461 SMART arm_5 248 288 IPR000225 GO:0005515
Ssu9g1042 461 SMART arm_5 366 408 IPR000225 GO:0005515
Ssu9g1042 461 Coils Coil 382 402 - -
Ssu9g1042 461 Pfam Armadillo/beta-catenin-like repeat 329 364 IPR000225 GO:0005515
Ssu9g1042 461 Gene3D - 249 430 IPR011989 -
Ssu9g1042 461 PANTHER U BOX DOMAIN-CONTAINING 3 460 - -
Ssu9g1042 461 Gene3D - 6 248 IPR011989 -
Ssu9g1042 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1042 207 423 U-box Gene Family AT2G23140 27.232 1.92e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1042 - - gmx:100819735 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1042 9 41322682 41324067 Ssu9g1042 9 41322682 41324067 ECH