Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1040 ATGCAAACATCACAGAATCCTAAAATTTCTTATGGCTCTGGCGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCATACCGTCGAGTGAGAACGTAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCAGTCCAGACCCTAGAACAATATTGCACCCTTGAATCTGCTTCTGCAAGCAACAGTTTCCCTTGCCAAAATTCTCCATCTGCTCCCAGTTTCTCATCTAACAATAGTCCGGTATCAAAGTCAGATGTGTTAAGGCTGCAGAATTCTCTTGAAATTGTTAATGGCTCACCCGAGGATGATTCTTACTTGACACATGACCTTGATGACCTGACACATAAGATAAGAGAGCTGGAAACTGCTATGCAGGGACCTAATCCAGATATGCTCGATATCTTTGGTACTGCAATTCCAGAAGAGCCTGATTCATTTTTGTTAGAGGTGAAGTGCAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGCGCAAAAGCAATGGCTGTGAATGATAGGGAGACAGCTGAGTGGCTGATGTCAGAGCTGCGTAACATGGTTTCCATTTCGGGCAACCCGATGCAACGGTTGGGAGCATACATGTTGGAGTCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATCTACTTTATGAAATTTGTCCATACTTCAAGTTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTCCACATAGTTGACTTTCAGATTGGCCAGGGAACCCAGTGGCTGAGCCTGATCCAGGCTCTTGCTCGCCGTCCTGGAGGGCCCCCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCATCTTATGCCCGGGGCGGGGGGCTTGATATTGTTGGGAAAAGGTTATCAGCACTTGCTCAGTCATGTCATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAGGTGCAACTTGAAGACCTTGAACTTCGCCATTATGAAGCCGTGGCAGTGAACTTTGCCATTATGCTGCACCATGTGCCAGATGAAAGTGTGAACAGTCACAATCATCGCGATCGGTTGTTGAGATTGTCCAAGCACTTGTCTCCTAAGGTGGTGACTCTGGTTGAGCAAGAATTTAACACCAACAATGCGCCGTTCTTGCAACGTTTTGTTGAGACGATGAACTACTACTTGGctatttttgaatcaattgatGCTGTTCTTCCAAGGGAGCACAAGGAAAGGATTAATGTGGAGCAACATTGCTTGGCTCGCGAAGTGGTCAACTTAATAGCATGTGAAGGGGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAATGGAGAAAGCGTTTCACAATGGCTGGATTTACACCTTATCCATTGAGCCCCGTTATTAATGCTTCAATCAAGGATCTTCTGCAGAGCTACCATGGACACTACACTCTAGAAGAGAGAGATGGTGCACTATTTCTTGGTTGGATGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1626 0.4416 MQTSQNPKISYGSGGFYVEPVQNLESYCIPSSENVDNYSSSDNSSQTTYPSVQTLEQYCTLESASASNSFPCQNSPSAPSFSSNNSPVSKSDVLRLQNSLEIVNGSPEDDSYLTHDLDDLTHKIRELETAMQGPNPDMLDIFGTAIPEEPDSFLLEVKCKKMMEMISRGDLKEMLYTCAKAMAVNDRETAEWLMSELRNMVSISGNPMQRLGAYMLESLVARMASSGSTIYKSLKCSEPTGNELLSYMHLLYEICPYFKFGYMSANGAIAEALKEESEVHIVDFQIGQGTQWLSLIQALARRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAQSCHVPFEFNAVRVPASQVQLEDLELRHYEAVAVNFAIMLHHVPDESVNSHNHRDRLLRLSKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAIFESIDAVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRKRFTMAGFTPYPLSPVINASIKDLLQSYHGHYTLEERDGALFLGWMNQVLIASCAWR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1040 541 Pfam GRAS domain family 171 541 IPR005202 -
Ssu9g1040 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 540 IPR005202 -
Ssu9g1040 541 MobiDBLite consensus disorder prediction 69 89 - -
Ssu9g1040 541 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 540 - -
Ssu9g1040 541 ProSiteProfiles GRAS family profile. 162 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1040 Ssu-Chr9 41257678 41259303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1040 51 541 GRAS Transcription Factor Family AT1G50600 60.600 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu9g1040 GRAS 2.9e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1040 - - gmx:100785400 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1040 9 41257678 41259303 Ssu9g1040 9 41257678 41259303 ECH
Ssu9g1040 9 41257678 41259303 Ssu6g3546 6 78823869 78825506 PCT