Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1039 ATGGACGCCGGCGAGGCCCTCTCCGACGATCCGAATGGCCCCGGGTCGAGGCCAAATCCGCCTGCCGACGGAGCTCCGTCCGGCGGCGGCGCGCGGTACAAGCTCATGTCGCCGGCGAAGCTTCCGATCTCGCGCTCGCCGTACGTCACGATTCCGCCGGGGCTCAGTCCGACGTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTACTATGCTTCATCAAACAGCATATGGTTCCCCAACTTCTGCTGCATCTGCTACATTTCCTGTAACCAGTGTATGCTTCAATACCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTCAAACCACCCAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATACTAGTGAAAAATCTACTCAAATAGACAGTCAAGGAAAAGCTCAAGCTTTTGATTCATCACCGTTAGTAAAAAATGAGATAGCAGTTCCTTTAAATGAATTAAGTCTATCATCACCAGTTCAAATGGTTAACTCAGGAGCTAGTGCCCGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAGTGGACTTTCGGTTGCAGCTGAGAGAGTATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACATGTGAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTTATGATGGGCAAATCACCGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCACACCGCCGTTACTCTGCTGGAACTATCATGTCTATGCAAGAAGAGAGATCTGATAAAGCTTCTTTGACTAGCCAAGATGACAAAGGTTCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCAGAGCTATCACCTGTAGCAACCAATGATGCTGATCTGGAGGGTATGAGGTTTTTGTCAAACCGGAATAATGATGAGCTTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGCTGACATCACTCCTGTAGTTAAGCCCATCCGGGAGCCACGGGTCGTTGTACAAACGCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACCGGTTGCCCTGTTAGAAAACACGTGGAGAGAGCATCTCATGATCCAAAGGCTGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGACAAGCAAGTGCAGGTGGACAGTCAAGAATTAGGCCAGAAGAAAGTGATACGATCAGCCTTGACCTTGGGATGGGAATTAGCCCAACTGCTGAAAACACATCAAACATTCAAGGGAGAATGATGCTTTCTGAATTTGGGGACAGTCAAACTCACACCAGCAATTCCAATTTTAAGTTTGTTCATACTACTTCGGCACCAGCATACTTTGGTGTTCTAAATAACAACTCTAATCCGTATGGTTCTAGAGAAAATCCCAGTGATAGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATACTAATGGGCCCTTGA 1746 0.4599 MDAGEALSDDPNGPGSRPNPPADGAPSGGGARYKLMSPAKLPISRSPYVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLTMLHQTAYGSPTSAASATFPVTSVCFNTNTVDDRKPSFFEFKPPSRSNMVPADSDNHTSEKSTQIDSQGKAQAFDSSPLVKNEIAVPLNELSLSSPVQMVNSGASARVEGDLDELNPRSNIATGLQASQVDNRGSGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITEIIYKGTHDHPKPQPHRRYSAGTIMSMQEERSDKASLTSQDDKGSNICGQVSHPAEPDSTPELSPVATNDADLEGMRFLSNRNNDELDDDDPFSKRRKMELGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGQASAGGQSRIRPEESDTISLDLGMGISPTAENTSNIQGRMMLSEFGDSQTHTSNSNFKFVHTTSAPAYFGVLNNNSNPYGSRENPSDSPSLNHSAYPCPQNMGRILMGP 581
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1039 581 SUPERFAMILY WRKY DNA-binding domain 393 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 SUPERFAMILY WRKY DNA-binding domain 223 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 MobiDBLite consensus disorder prediction 548 572 - -
Ssu9g1039 581 ProSiteProfiles WRKY domain profile. 396 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 Gene3D WRKY domain 386 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 Gene3D WRKY domain 218 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 561 IPR044810 GO:0003700
Ssu9g1039 581 MobiDBLite consensus disorder prediction 1 37 - -
Ssu9g1039 581 MobiDBLite consensus disorder prediction 548 569 - -
Ssu9g1039 581 MobiDBLite consensus disorder prediction 116 157 - -
Ssu9g1039 581 MobiDBLite consensus disorder prediction 300 319 - -
Ssu9g1039 581 MobiDBLite consensus disorder prediction 300 336 - -
Ssu9g1039 581 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 SMART WRKY_cls 401 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 MobiDBLite consensus disorder prediction 130 156 - -
Ssu9g1039 581 ProSiteProfiles WRKY domain profile. 221 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 18 561 - -
Ssu9g1039 581 Pfam WRKY DNA -binding domain 402 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g1039 581 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu9g1039 Ssu-Chr9 41248834 41254497 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1039 36 581 WRKY Transcription Factor Family AT4G26640 56.679 0.0 541
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu9g1039 WRKY 1.7e-25 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1039 - - gmx:100781491 1053.89
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1039 9 41248834 41254497 Ssu9g1039 9 41248834 41254497 ECH
Ssu9g1039 9 41248834 41254497 Ssu6g3544 6 78813835 78819382 PCT