LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1039	ATGGACGCCGGCGAGGCCCTCTCCGACGATCCGAATGGCCCCGGGTCGAGGCCAAATCCGCCTGCCGACGGAGCTCCGTCCGGCGGCGGCGCGCGGTACAAGCTCATGTCGCCGGCGAAGCTTCCGATCTCGCGCTCGCCGTACGTCACGATTCCGCCGGGGCTCAGTCCGACGTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTACTATGCTTCATCAAACAGCATATGGTTCCCCAACTTCTGCTGCATCTGCTACATTTCCTGTAACCAGTGTATGCTTCAATACCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTCAAACCACCCAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATACTAGTGAAAAATCTACTCAAATAGACAGTCAAGGAAAAGCTCAAGCTTTTGATTCATCACCGTTAGTAAAAAATGAGATAGCAGTTCCTTTAAATGAATTAAGTCTATCATCACCAGTTCAAATGGTTAACTCAGGAGCTAGTGCCCGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAGTGGACTTTCGGTTGCAGCTGAGAGAGTATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACATGTGAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTTATGATGGGCAAATCACCGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCACACCGCCGTTACTCTGCTGGAACTATCATGTCTATGCAAGAAGAGAGATCTGATAAAGCTTCTTTGACTAGCCAAGATGACAAAGGTTCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCAGAGCTATCACCTGTAGCAACCAATGATGCTGATCTGGAGGGTATGAGGTTTTTGTCAAACCGGAATAATGATGAGCTTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGCTGACATCACTCCTGTAGTTAAGCCCATCCGGGAGCCACGGGTCGTTGTACAAACGCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACCGGTTGCCCTGTTAGAAAACACGTGGAGAGAGCATCTCATGATCCAAAGGCTGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGACAAGCAAGTGCAGGTGGACAGTCAAGAATTAGGCCAGAAGAAAGTGATACGATCAGCCTTGACCTTGGGATGGGAATTAGCCCAACTGCTGAAAACACATCAAACATTCAAGGGAGAATGATGCTTTCTGAATTTGGGGACAGTCAAACTCACACCAGCAATTCCAATTTTAAGTTTGTTCATACTACTTCGGCACCAGCATACTTTGGTGTTCTAAATAACAACTCTAATCCGTATGGTTCTAGAGAAAATCCCAGTGATAGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATACTAATGGGCCCTTGA	1746	0.4599	MDAGEALSDDPNGPGSRPNPPADGAPSGGGARYKLMSPAKLPISRSPYVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLTMLHQTAYGSPTSAASATFPVTSVCFNTNTVDDRKPSFFEFKPPSRSNMVPADSDNHTSEKSTQIDSQGKAQAFDSSPLVKNEIAVPLNELSLSSPVQMVNSGASARVEGDLDELNPRSNIATGLQASQVDNRGSGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITEIIYKGTHDHPKPQPHRRYSAGTIMSMQEERSDKASLTSQDDKGSNICGQVSHPAEPDSTPELSPVATNDADLEGMRFLSNRNNDELDDDDPFSKRRKMELGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGQASAGGQSRIRPEESDTISLDLGMGISPTAENTSNIQGRMMLSEFGDSQTHTSNSNFKFVHTTSAPAYFGVLNNNSNPYGSRENPSDSPSLNHSAYPCPQNMGRILMGP	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1039	581	SUPERFAMILY	WRKY DNA-binding domain	393	461	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	SUPERFAMILY	WRKY DNA-binding domain	223	285	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	548	572	-	-
	Ssu9g1039	581	ProSiteProfiles	WRKY domain profile.	396	461	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	Gene3D	WRKY domain	386	462	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	Gene3D	WRKY domain	218	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	18	561	IPR044810	GO:0003700
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	1	37	-	-
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	548	569	-	-
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	116	157	-	-
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	300	319	-	-
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	300	336	-	-
	Ssu9g1039	581	SMART	WRKY_cls	226	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	SMART	WRKY_cls	401	460	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	MobiDBLite	consensus disorder prediction	130	156	-	-
	Ssu9g1039	581	ProSiteProfiles	WRKY domain profile.	221	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	18	561	-	-
	Ssu9g1039	581	Pfam	WRKY DNA -binding domain	402	458	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu9g1039	581	Pfam	WRKY DNA -binding domain	227	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1039	Ssu-Chr9	41248834	41254497	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu9g1039	36	581	WRKY Transcription Factor Family	AT4G26640	56.679	0.0	541

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu9g1039		WRKY	1.7e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1039	-		-	gmx:100781491	1053.89

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu9g1039	9	41248834	41254497	Ssu9g1039	9	41248834	41254497	ECH
	Ssu9g1039	9	41248834	41254497	Ssu6g3544	6	78813835	78819382	PCT