Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu9g1033 | ATGGCAGTTACATTCTACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTCGATGAGTACCTTCTCCAACGCAGTTATATCACTGGCTACCAGGCTTCAAAGGACGATCTTGCTGTATATGCAGCTTTGCCAACTGCTCCATCAGATGAGTATGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCATTGTTGAGAATCTCTGGTGTTTCTGGTGAGGGATGTGGTGTTACTGTTGAGGGATGTCTTGTTGCGGAGGCTGTTGCAACTCCCCCTGCTGCTGACACGAAGGCCGCTGCGGCtgaggatgatgatgatgatgatgtggaTTTGTTTGGTGAAGAGacagaagaagagaagaaggcaGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCtgccaaaaagaaagaatCTGGGAAATCATCTGTTTTGTTGGATGTGAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGATGGGTTGCTTTGGGGtgcatCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTGCAAATTATGCTTACTATTGTGGATGACCTTGTTTCTGTTGACAATCTTATTGAGGAATATCTCACAGTTGAACCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCTTTCAACAAAATATAA | 693 | 0.4127 | MAVTFYDLSSASGLKKLDEYLLQRSYITGYQASKDDLAVYAALPTAPSDEYVNVSRWYKHIDALLRISGVSGEGCGVTVEGCLVAEAVATPPAADTKAAAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVQMDGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEYVQSCDIVAFNKI | 230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu9g1033 | 230 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 105 | 113 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Ssu9g1033 | 230 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 230 | - | - | |
| Ssu9g1033 | 230 | PANTHER | ELONGATION FACTOR 1-DELTA 1-RELATED | 1 | 230 | - | - | |
| Ssu9g1033 | 230 | SMART | EF1_GNE_2 | 141 | 230 | IPR014038 | GO:0003746|GO:0006414 | |
| Ssu9g1033 | 230 | SUPERFAMILY | eEF-1beta-like | 138 | 230 | IPR036219 | - | |
| Ssu9g1033 | 230 | Gene3D | - | 4 | 74 | - | - | |
| Ssu9g1033 | 230 | SUPERFAMILY | GST C-terminal domain-like | 11 | 67 | IPR036282 | - | |
| Ssu9g1033 | 230 | Gene3D | - | 134 | 230 | IPR014717 | - | |
| Ssu9g1033 | 230 | CDD | EF1B | 139 | 230 | IPR014038 | GO:0003746|GO:0006414 | |
| Ssu9g1033 | 230 | Pfam | EF-1 guanine nucleotide exchange domain | 143 | 230 | IPR014038 | GO:0003746|GO:0006414 | |
| Ssu9g1033 | 230 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 219 | 230 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Ssu9g1033 | 230 | Coils | Coil | 113 | 133 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu9g1033 | Ssu-Chr9 | 41102576 | 41104193 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu9g1033 | 5 | 230 | Eukaryotic Initiation Factors Gene Family | AT2G18110 | 79.825 | 5.07e-114 | 324 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu9g1033 | K03232 | - | gmx:100499878 | 342.813 |