Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1030 ATGCTGAGAGATCTCCCAAAAGAAGTTGCAGACATTACAGATGAACTAGAAAGCTTTCAAGATTTCATAATTAATGATGCAGACAAAGTGGCTGAAGCTGAAGAAGATAACAATAGGCGTGATAGAATCAAAAAAAGGGTGATGCGGCTGAGAGAAGCAGCTTTTCGCATGGAAGATGTCATCGATGAATATATGATCTGTGAGGATAAGCAACCTGACGATCCTCTATGTGCAGCTTTACTCTGTGAGGCTGTTGACTACATCAAAACTCTGATCCTTCGCCTTCAAATAGCATATAAGATTCAGGATGTTAAATCACTTGTTCGTGCTGAAAGAGACGGTTTCCAAAGGGAATTTTCTTTAGAACAAAGATCAAACAGTTCCAGAGGAATGCAAAATGTCACATGGCTCAAACTTCGAATGGATCCTCTCTTTATTAAGGAAGCTGAGGTTGTGGGCCTTGCCGGTCCTAAATCTACATTGAAAAGTTGGTTAACAAAGGGACGAAAAGAACGCACTGTCATCTCTGTTGTAGGAATTCCAGGAGTGGGAAAAACCACTCTTGCCAAGCAAGTTTTTGACCAGGTCCGTAAAAACTTCGAGTGCCATGCATTGATCACAGTGTCTCAATCCTACACTGTAGAAAGATTCCTGAGGGATCTGTTGGGCAACATTtgccaagaaaaaaagaaggatcCTCCCCAGAATGTTTCTACGATGGATCAAAGGTCATTGATAGAAGAAGTCAGAAAACACTTGCGCAACAAGAGGTATGTTGTCTTGTTTGATGATGTGTGGAATGAAATATTTTGGGATGACATTGAATCTGCTATGattgatgataaaaataaaagcaggATATTAATCACAACCAGGTACGAGAGGGTTGCAAACTTCTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTAGAAGAACCTTTAGATGATAAAGAATCTTTGAGATTGTTCTGTAAGAAGGCATTTAAGTATGGTTCTGATGGCTGTTGTCCAGAAGAACTCAAAGATATATCTGTTGAAGTTGTTAGCAAGTGTAAAGGTTTACCTCTAGCAATTGTGGCTATTGGTGGTCTTTTATCTAGTAAAGATAAAGACGTAGATCAATGGAAAAAGTTTAGTCAAAATCTAAGTTTAGAGTTGAAGAGGAATTCTGAGTTAAATAGTGtagcaaaaattttaagtttaagttATGATGATTTGCCGTACAATCTCAGATCATGTTTATTGTATTTTGGAATGTATCCTGAAGCCTTTGAAGTTAAATCTGGTAGATTGATTAGGCAGTGGATAGCTGAAGGGTTTGTCAAAcgtgaaaatgaaaaaactttagAAGAAGTTGCACAACAACATTTAATAGAGTTGATCACTAGGAGTTTGGTGCAAGTATCTTCGTTTACCATAGATGGCAAAGTTAAAGGATGTCGTGTTCATGACTCAATACATGAAATGATCCTTGGCAAAATCAAGGATACTGGGTTAACGAGTTCCAATGATTTAATAGGAAGTATTGAAAGATCACACATTCGGTCAATTCTATTTTTCAAACAGTACCACTTATCTGATCACTTCATTAGTGGAATCCTTGCAAAATATATGCCATTGAAGGtacttgattttgaaaatgctCTATTGTATCATGTTCCTGAAAATTTGGGGAATTTAATCCAGTTGAAGTATCTAAGCTTCAGGAATACCGAGATAAAAAGCCTTCCAAAATCCATTGCTAAGCTCCAGAACTTGGAGACCTTGGATGTACGAAGAACAGCTGTGTCTGACATACCAAAGGAGATGACCAAGCTTAGAAAGCTACGTCATTTGCTGGGTACCACAATACCTTCCATTGCAGTGAAGGATAGTCTTGGAGGCATGGCATCCCTCGAAAAGCTACGTGTACTAGAAATAGATCAGGATGGAGCGGTAATTAAAGAGCTTGGAAAGCTAAATCAATTAAGGGATCTGAGGATTACTAAGTTTAGGGGAGAACACAGCAACACTCTTTTTCTCAATAAATGA 2034 0.3653 MLRDLPKEVADITDELESFQDFIINDADKVAEAEEDNNRRDRIKKRVMRLREAAFRMEDVIDEYMICEDKQPDDPLCAALLCEAVDYIKTLILRLQIAYKIQDVKSLVRAERDGFQREFSLEQRSNSSRGMQNVTWLKLRMDPLFIKEAEVVGLAGPKSTLKSWLTKGRKERTVISVVGIPGVGKTTLAKQVFDQVRKNFECHALITVSQSYTVERFLRDLLGNICQEKKKDPPQNVSTMDQRSLIEEVRKHLRNKRYVVLFDDVWNEIFWDDIESAMIDDKNKSRILITTRYERVANFCKKSSFIEVHKLEEPLDDKESLRLFCKKAFKYGSDGCCPEELKDISVEVVSKCKGLPLAIVAIGGLLSSKDKDVDQWKKFSQNLSLELKRNSELNSVAKILSLSYDDLPYNLRSCLLYFGMYPEAFEVKSGRLIRQWIAEGFVKRENEKTLEEVAQQHLIELITRSLVQVSSFTIDGKVKGCRVHDSIHEMILGKIKDTGLTSSNDLIGSIERSHIRSILFFKQYHLSDHFISGILAKYMPLKVLDFENALLYHVPENLGNLIQLKYLSFRNTEIKSLPKSIAKLQNLETLDVRRTAVSDIPKEMTKLRKLRHLLGTTIPSIAVKDSLGGMASLEKLRVLEIDQDGAVIKELGKLNQLRDLRITKFRGEHSNTLFLNK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1030 677 PANTHER DISEASE RESISTANCE PROTEIN RP 8 672 IPR044974 GO:0006952
Ssu9g1030 677 Coils Coil 33 53 - -
Ssu9g1030 677 Gene3D - 404 494 IPR036388 -
Ssu9g1030 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 418 IPR027417 -
Ssu9g1030 677 Gene3D Ribonuclease Inhibitor 509 675 IPR032675 -
Ssu9g1030 677 Gene3D - 145 308 IPR027417 -
Ssu9g1030 677 Pfam Rx N-terminal domain 2 72 IPR041118 -
Ssu9g1030 677 Gene3D - 1 98 - -
Ssu9g1030 677 SUPERFAMILY L domain-like 482 664 - -
Ssu9g1030 677 Pfam NB-ARC domain 159 406 IPR002182 GO:0043531
Ssu9g1030 677 Gene3D - 314 403 IPR042197 -
Ssu9g1030 677 PRINTS Disease resistance protein signature 174 189 - -
Ssu9g1030 677 PRINTS Disease resistance protein signature 582 598 - -
Ssu9g1030 677 PRINTS Disease resistance protein signature 252 266 - -
Ssu9g1030 677 PRINTS Disease resistance protein signature 352 366 - -
Ssu9g1030 677 PANTHER - 8 672 - -
Ssu9g1030 677 CDD RX-CC_like 1 106 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1030 Ssu-Chr9 41030409 41032442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1030 175 371 WRKY Transcription Factor Family AT5G45050 29.442 1.25e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1030 K13457 - gmx:100806153 905.59