Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1020 aTGGGTATGGTGCCACTGAATTTGATTCCTGAGGCAGTGAGGAATTTGGTTCATGAGCACGCACAAGTGGTGCCAATATCACTCTTTGTGGCTGTTCTCTGCCTCTGCTTGGTCATTGGTCACTTGCTTGAGGAAAATCGATGGGTTAATGAATCCATTGTTGCCATTATAGTAGGATGCATTGCTGGAATGATACTGTTATTAATCACCAAAGGGAAGAGTTCTCACATCCTTACGTTTAATGAAGAACTATTCTTCATACATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTAAAGAAGAAACAATTCTTCCATAACTTTTTAACCATCATGCTGTTTGGGGTGATCGGTGTTTTTATCTCAGCATCTGTTATTACCTGCGGCAGCTGGTGGCTGTTCCCCAAGTTAAACTTGCTTGGCCTGACTGGGAGAGATTATCTCGCTATAGGAACAATTTTCTCATCAACGGACACAGTTTGTACCCTCCAGGTTCTCCATCAAGATGAAACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTTTCTTCAATGCAGTGCAAAAACTTGATGTTTCAAGATTTAGTGGCAACACGTTCCATGTTATTGGAGATTTCTTGTATCTATTTGTAACAAGCACTGGTCTTGGAGTTATAGCTGGCCTTCTCACAGCATATATCTTGAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCATTGATGATCTTAATGGCATACCTATCCTACATGTTGGCAGAGCTATTTGATCTAAGTGGAATCCTCACTGTTTTCTTTTGCGGAATACTAATGTCACATTATGCATGGCATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTTCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACCCAATTAAGTTATGGAAATTTGATAGGGATTTACAGTTCCTTAATCCTATTGATATTGCTCGGGCGAGCTGCATTTGTTTTCCCTCTCTCTGCTCTTTCCAATTATATGAATTCGCGGGCTCACCAAGCATCAAGTATCACATTCAAACATCAGATAATCATTTGGTGGGCTGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCATTCAAACAGTTCACATTTTCTGGAGTTACTTCTGATCcagttgatgcaacaatgaTTACCAACACCATTATTGTTGTCCTTTTCAGCACAATGGTGTTTGGTTTTCTCACAAAACCACTAATTAGATATCTGCTCCCCCACAGTGCCACAAGGAAAAACATCAGCCATGAAGAATCAGGTCCACCAGTTGAGGACTTGAATCTACCTTTGCTATCCCTTGAGGAGTCCGCAGCAACCAACATCAGCCGTGCAAAGGAAAGTTTATCCATGTTAATAGAAAGTCCTGTGTTCACCATACATCACTATTGGAGGAGGTTTGATGATGCTTACATGAGACCTATATTTGGGGTACCTCATGTTAGTGACTCAGTGCTAGCAATATAG 1590 0.4063 MGMVPLNLIPEAVRNLVHEHAQVVPISLFVAVLCLCLVIGHLLEENRWVNESIVAIIVGCIAGMILLLITKGKSSHILTFNEELFFIHLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISASVITCGSWWLFPKLNLLGLTGRDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVFFNAVQKLDVSRFSGNTFHVIGDFLYLFVTSTGLGVIAGLLTAYILKALSFGRHSSVREIALMILMAYLSYMLAELFDLSGILTVFFCGILMSHYAWHNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTQLSYGNLIGIYSSLILLILLGRAAFVFPLSALSNYMNSRAHQASSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVDATMITNTIIVVLFSTMVFGFLTKPLIRYLLPHSATRKNISHEESGPPVEDLNLPLLSLEESAATNISRAKESLSMLIESPVFTIHHYWRRFDDAYMRPIFGVPHVSDSVLAI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1020 529 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu9g1020 529 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu9g1020 529 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu9g1020 529 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu9g1020 529 PANTHER SODIUM/HYDROGEN EXCHANGER 14 524 - -
Ssu9g1020 529 PANTHER SODIUM/HYDROGEN EXCHANGER 14 524 IPR018422 GO:0006812|GO:0015299|GO:0016021
Ssu9g1020 529 Gene3D - 25 452 IPR038770 -
Ssu9g1020 529 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1020 Ssu-Chr9 40812012 40817905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1020 14 525 Antiporters AT5G55470 71.124 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1020 - - gmx:100813332 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1020 9 40812012 40817905 Ssu9g1020 9 40812012 40817905 ECH