Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1010 atgaCCATACCTTGGTTCTCACattgttatttctttcttttttcccttattTTCAGGGCAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGTCATGCATCTGCTATAAGAAGGAAGATCACGATATTAGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGTTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAACCAGATGCAATGGGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTAACCAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGGATCTACACACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACTGATTCTCGGCTGAGGCGAGTGCAGAAGAACTTGGCGGTTTTGAACAAACGTACCAAGGGTGCTTGCTCCTGCTTGTGCATGCTTTTATCAGTGATTGGTATAGTGGTTTTGATTGTTGTCATATGGTTGTTGGTCAAAtatttgtaa 750 0.408 MTIPWFSHCYFFLFSLIFRAMASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKFPAKTEKEMNRRKDMLANLRTKVNQMASTLNMSNFANRDSLLGPEIKPDAMGRTVGLDNSGLVGLQRQIMKEQDEGLEKLEETVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGACSCLCMLLSVIGIVVLIVVIWLLVKYL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1010 249 Gene3D - 155 217 - -
Ssu9g1010 249 Pfam SNARE domain 190 241 IPR000727 -
Ssu9g1010 249 SMART tSNARE_6 148 215 IPR000727 -
Ssu9g1010 249 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Ssu9g1010 249 CDD SNARE_Qc 156 213 - -
Ssu9g1010 249 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 21 244 - -
Ssu9g1010 249 PANTHER SYNTAXIN 21 244 IPR045242 -
Ssu9g1010 249 SUPERFAMILY SNARE fusion complex 144 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1010 Ssu-Chr9 40671973 40673802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1010 21 249 SNARE and Associated Proteins AT1G16240 72.845 1.66e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1010 K08503 - gmx:100794038 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1010 9 40671973 40673802 Ssu9g1010 9 40671973 40673802 ECH
Ssu9g1010 9 40671973 40673802 Ssu6g3524 6 78402643 78403962 PCT