Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0995 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCCCTCTCTGCTATCAATCAAGCCCTTCTCTCTGATTCAACGAACCCTGAGCTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACACGCACGATTGTTGCAGGAAGCAGATTCAGTGCTGCGTAACGCTGACATTTTTACTGAAGAGGAGAAAGTGGAGCCCCTTGATCCCACAGATGTTGAACCAGAGCCATTGGAGGAAAAATGTTATTCTGTTGGATCTAAATGTAGATTCCGTTACAAAGATGGGCGTTGGTACAACGGTCAAGTGGTGCAATTGGATAATTCACTGGCAAAAGTTTCATTCCTTACTCCTACTGCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTCCCTGCAATCTGGAAGCAGTCCCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAACTCGAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGCTGATGGGAGTTCTGTGAAACTTGGTGCAGAAGAAATGGCACTGTCTGAGCATGCAGAAGTGAGTGACTTAGAGAGTGATTCCAGCTTAGAACAATCTGATTCCAGTGATTACGAGGAGGAGGAATTGCAAGGTTTAGGATTTCTGGATAGTACAATCCTACAGAGAGGTGTTCAAACCGAAACTGCAAAATTTGCCAAGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGGATGGGTTTAGGCGTAACTGGTCAGGGAATGCTGGACCCCATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTCGAAAgtcaaagaagagaagagaacggAGAGAAGCAAGGCAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGCGACAAGAAGTTTGCAGAAGCGAATCGTGCAGCAAACGAGGAAGACGAGTTGGCATCAGATGTCTTTGCATTAATAAACAATCAGCTGGCAATGCACGGTGAGGCTTCCAACGAGGTGAAGGATTTGAAGGCGAGggttgaaaagcttgaacaCATTGTGAATGCCAATAGAAAAGAGAAGGCTGTTTTTGAGGCTGCtatgagaaaattaaatgaaacccGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATGCAGTTGTtagcaaagaaaaagagaagagatgGCTTAAGTTTTAG 1401 0.4333 MGSEEERVLENQLELQLQEQRDSLSAINQALLSDSTNPELLAVHEELVQAIKDAEEGLLHLKHARLLQEADSVLRNADIFTEEEKVEPLDPTDVEPEPLEEKCYSVGSKCRFRYKDGRWYNGQVVQLDNSLAKVSFLTPTAENMLMCKFFLQQRCRFGSNCRLSHGVDVQLSALKKYVPAIWKQSLVGSSIWAVSTANAGTWREAELESWDEKAGVGQVVFRADGSSVKLGAEEMALSEHAEVSDLESDSSLEQSDSSDYEEEELQGLGFLDSTILQRGVQTETAKFAKWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESQRREENGEKQGKKRSRGGKRKRDKKFAEANRAANEEDELASDVFALINNQLAMHGEASNEVKDLKARVEKLEHIVNANRKEKAVFEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0995 466 Coils Coil 426 446 - -
Ssu9g0995 466 MobiDBLite consensus disorder prediction 339 353 - -
Ssu9g0995 466 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 399 466 - -
Ssu9g0995 466 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 400 - -
Ssu9g0995 466 Gene3D - 100 178 - -
Ssu9g0995 466 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Ssu9g0995 466 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Ssu9g0995 466 Coils Coil 10 30 - -
Ssu9g0995 466 MobiDBLite consensus disorder prediction 339 374 - -
Ssu9g0995 466 SMART G-patch_5 292 338 IPR000467 GO:0003676
Ssu9g0995 466 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Ssu9g0995 466 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Ssu9g0995 466 SUPERFAMILY CCCH zinc finger 143 166 IPR036855 GO:0046872
Ssu9g0995 466 Coils Coil 395 422 - -
Ssu9g0995 466 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu9g0995 G-patch 1.1e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0995 - - gmx:100794921 724.546