Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0993 ATGGGTAGGGGCGGAACCGCGGCGGCGGCGGAGATCGGCGAACCCGGTTCAAGGCCGGTTTTTTTCAAAGAACCGCGATACAGGGGCGTGAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCGAGGGTTTGGCTCGGAACCTTCGACACCGCCGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGAGAAACCTCCGGGGACCCAAGGCGAAGACCAATTTCCCCCTCTCGCCGCCGTTCTACCACCCCGATCCGTTTTCCGACCACCGGTACTTCGCCGGCGCCGGTGAAGGGTTTCACGATCACCGGCGACCCACCTCCAGCGGCATGAGCAGCACCGTCGAGTCCTTCAGCGGCCCCCGCCCCGCCGGTCCGCTTCCGCCGCCGGTGGCCGTAGCCCGGAGATACCCACGAACGCCGCCGGTGGTTCCCGAGGACTGCCGCAGCGACTGCGACTCGTCGTCCTCCGTCGTTGACGACGGCGACGGCGAGAATGTGGCGTCGTCGTTCCGGCGCCAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTGGACGATGCTGACGTGGCAAACGACGATCTGTTCTGCACCGTTCTTTGCCTCTGA 630 0.654 MGRGGTAAAAEIGEPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDAAARNLRGPKAKTNFPLSPPFYHPDPFSDHRYFAGAGEGFHDHRRPTSSGMSSTVESFSGPRPAGPLPPPVAVARRYPRTPPVVPEDCRSDCDSSSSVVDDGDGENVASSFRRQPLPFDLNALPLDDADVANDDLFCTVLCL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0993 209 MobiDBLite consensus disorder prediction 111 136 - -
Ssu9g0993 209 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 191 - -
Ssu9g0993 209 MobiDBLite consensus disorder prediction 149 177 - -
Ssu9g0993 209 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Ssu9g0993 209 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Ssu9g0993 209 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Ssu9g0993 209 PANTHER ETHYLENE RESPONSE FACTOR 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0993 Ssu-Chr9 40461733 40462362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0993 23 209 AP2-EREBP Transcription Factor Family AT1G50640 62.927 2.57e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu9g0993 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0993 K09286 - gmx:100782025 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0993 9 40461733 40462362 Ssu9g0993 9 40461733 40462362 ECH
Ssu9g0993 9 40461733 40462362 Ssu6g3508 6 78019423 78020046 PCT