Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0985 ATGCACTTCAAAATGGCAATAACAGTGGACAAGTGGAACCTAGAACTAGTGGCAAGAAAGGGGTTTCAAGTAGGAGTTGAAGCAGCAATCTCTTGGGAAACTATTGAATGTGAGAAGACAGGTCGGTGTGGTTCTTTGCTGAAGCTAGGAAATAGCAAAGATAGACACATAGGATGTGAAGGGACCGATGGCTTGCTGACaaatttaactcaaaatcaAGTCTTTCACAGAGATTTCTTGGAAGAAAACACTGCCAAGGATCATGGAAACACATCTGCAGTTAAGTTGGTTGATGCCAGTAGAAAGAGAAAGCATGGTTCTGGTTCTGAGGAGAAGGAAGATAAAGAAAAGTTGGTTAATGTCAGTGAAAAGAAAAAGCGTGGTCCTCTTtctgaaaagaagaaagaaaagaagaagataaaatatagaaagaatcGGGCAGAAAAGAACAGAGAACTAGGTGTTAAAAGGTTGCAGTTGCAGCATGTACAGAAACCAAAAATTGTCTCACATTGTCGCCATTATCTCAAAGGAAGGTGCCACGAGGGTGACAAGTGTCAATTTTCACATGATATAGTCCCTCTAACAAAATCCAAGCCATGTACTCACTTTGCACGTCACTCATGCATGAAAGGGGACGACTGCCCATTTGATCACCAGCTCTCAAAATATCCGTGTAACAATTTTGTGTCCAGAGGCTCTTGTAGCAGAGGCGATGCTTGCTTGTTTTCTCACCAGGTACCAACCAACGAAGATATCCCTACACCTTCAAATGTTTGCAGACCAGAGTTGAAGTCTCAACTTCTGTCAGGAAATGCAAATTTCAGTACACCACTTAACAATCATGGCTCTAGTTCTGTCCAGCAAAACCACTTTACTAATTCTGCAGGAATTCATTCTTGCGTCAATGTTGAACATAAGGTGACAGACACTGTACAGAAACATCCTACACCACCTAAAGGAATTAGTTTCATTAATCTTGCAAAATTATCACCCAGCTCTAGTACACTGAAACAAGGCACAGTAACAACAACTAAGGGAAGTCCTGTACAAATTGGGACTTGTGAAGATCAAAGTGCATTTGCCAAAACTCAAAACAAGGTGGAAATTCCCAAGAAATTGCCAGCTGTGACACCCAAGGgaataaattttctttcttttggcaAAGGTTCTGTCTGCAGTTTTAAAAGTCCTATTGGCTCCAATGTGAATAGGGAAAATGGTAGCAAGTTGCCTCAGTTATTCAATTTTGGTTTGCCTGAGCGGGCAAGTTCGTCTCTAAATAAGGATGATTACAACAAAGCTAGTGacagaacaaaacaaaatgtatCACTGACGGATATTTTCTTAAAtgagattttagaaaaaaataaatctatggCAGAAGGAATGAAATCAATGTTTCCAGAGAAAACCTCAGTAGATGTTTCTATGAGGGATCACAGCCTTAGTAAATCAGTTCAAGAGGGAAAAAAGCCATCTGATCATTCTCAGAGTTCAAATGTGACCTCAGTTACACTTCGTCCATTTGTTTCAAAGCAGTCTTCTGAACGCCTAATATCTGGTTGTCATAAGCTTGCATCAAACTCAGGCCAAAGGGCACTCTTATCAACTTTAGCATTTGCAGCAGAGCATGAATCTGATATTAAGATGAAATATCCTACTGGTGATTCGCCAGTATGA 1683 0.3803 MHFKMAITVDKWNLELVARKGFQVGVEAAISWETIECEKTGRCGSLLKLGNSKDRHIGCEGTDGLLTNLTQNQVFHRDFLEENTAKDHGNTSAVKLVDASRKRKHGSGSEEKEDKEKLVNVSEKKKRGPLSEKKKEKKKIKYRKNRAEKNRELGVKRLQLQHVQKPKIVSHCRHYLKGRCHEGDKCQFSHDIVPLTKSKPCTHFARHSCMKGDDCPFDHQLSKYPCNNFVSRGSCSRGDACLFSHQVPTNEDIPTPSNVCRPELKSQLLSGNANFSTPLNNHGSSSVQQNHFTNSAGIHSCVNVEHKVTDTVQKHPTPPKGISFINLAKLSPSSSTLKQGTVTTTKGSPVQIGTCEDQSAFAKTQNKVEIPKKLPAVTPKGINFLSFGKGSVCSFKSPIGSNVNRENGSKLPQLFNFGLPERASSSLNKDDYNKASDRTKQNVSLTDIFLNEILEKNKSMAEGMKSMFPEKTSVDVSMRDHSLSKSVQEGKKPSDHSQSSNVTSVTLRPFVSKQSSERLISGCHKLASNSGQRALLSTLAFAAEHESDIKMKYPTGDSPV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0985 560 ProSiteProfiles Zinc finger C3H1-type profile. 166 193 IPR000571 GO:0046872
Ssu9g0985 560 Pfam CCCH-type zinc finger 171 191 IPR041367 -
Ssu9g0985 560 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Ssu9g0985 560 ProSiteProfiles Zinc finger C3H1-type profile. 225 248 IPR000571 GO:0046872
Ssu9g0985 560 Coils Coil 130 150 - -
Ssu9g0985 560 Gene3D - 131 196 - -
Ssu9g0985 560 MobiDBLite consensus disorder prediction 493 507 - -
Ssu9g0985 560 Gene3D - 197 258 - -
Ssu9g0985 560 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 85 548 IPR045124 GO:0003723|GO:0045892
Ssu9g0985 560 MobiDBLite consensus disorder prediction 473 507 - -
Ssu9g0985 560 MobiDBLite consensus disorder prediction 90 143 - -
Ssu9g0985 560 MobiDBLite consensus disorder prediction 97 130 - -
Ssu9g0985 560 SUPERFAMILY CCCH zinc finger 224 251 IPR036855 GO:0046872
Ssu9g0985 560 SUPERFAMILY CCCH zinc finger 167 191 IPR036855 GO:0046872
Ssu9g0985 560 MobiDBLite consensus disorder prediction 474 492 - -
Ssu9g0985 560 SMART c3hfinal6 223 247 IPR000571 GO:0046872
Ssu9g0985 560 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Ssu9g0985 560 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Ssu9g0985 560 PANTHER PROTEIN SUPPRESSOR OF SABLE 85 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0985 Ssu-Chr9 40166816 40170368 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu9g0985 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0985 - - aprc:113854397 748.429