Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0982 ATGGAAGCTACCTGCAATGATAACTCGCTTGCGTCATTTTCACATTCTTCTCCAGTGATGTCGTTAAATGGGAAACGACTAGTCGTGGATGAGATGGATTTCTTCGCAGAGAAGAAGAGCAAGAAAAGTGCAGTTGATGATCAAATGGTGGACCAAATGGAGCTTCAAGTAGATACTAGTTTGGATCTCCTTACAAAGAGTTCCGCTAGCAATATATCAACTATGGAAGAAGGACCGTCGGAGGCAAGGGATGATAAGAGAAATAAGCTTGTAGCTATGCTAGCTGAATTGCACCACATGAATGTTGAAAATCAACGCTTGAGACAGCTGGTTGATCAGGTGAACAATAAGTATAATGCCCTACACAAGCATCTTATGGAACTGATGCAGAAACAAcataagATTAACAGAGCCACAGGGGAGAAGGGTGAGAAAGATGATATGATTCCAAGGCCATTCTTTGATATTGGAGTTGCTATAAAGGAAGAGACTTCGCCGCGATATTCCAAAGGAAAACTGCGAGAAAGCAAAAGCATGATTGACTTGATAGAGTGCAAGACTCAGAAGATTTGCACTAGTATAGATGTTGTTGAGTTGGACCCAGACAAGTTGGATTCTGGCAGGGATAGCGCAAAATCCAGAAGAGATCAGCATGAGAGTTCATCTGACAAAGCTATTCCGGGGCGGCTCTCATCAAACGATGTAGCGAGATTGAGTTCTTTAAGGGAAGTTGATCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGCGTATCAGTTCGAGCAAGATCAGAGTCTTCTATGATTTCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCGCGAGCTTATTATCGTTGCTCAATTGGGACTGGTTGTCCGGTTCGGAAGCAAGTACAAAGGAGCGCTGAGGATCCAAGTGTGTTGATCACAACATATGAAGGGCAGCATAATCATATACTCCCTCCCACTGCCAAGGCAATGGCATCCACCACATCAGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTATACACCCAAACATATTAGAAAGTGCAGCACTTCCATTTTCGCAGAGCTTAGTAACCCTCTCAACTTCAACTCCATTTCCAACTATCACTTTGGATCTCACTCAAGGTGCTACCAATAATTCCTCACAGCTACTACAAGGGGCACCACAGGATAACCAACATTGCCTCCTTTCCCCACTTTTGGCTCAGGAGTTTATGTCAGCCCAAGACATTTTTGACCAAACTAAGCTTTCTAGCATACATGGGTCTCAGGGAAGAGAAACAACTTCATTTGTTGACACGGTAAATGCAGCAACAGCTGCTATAACTGCGGACCCGAAATTTAGGGTAGCTCTTATGGCTGCCATAACATCTATTATTAGAAGTTCACATCCAAACAATATTAATGGTGCAAGTGGAGATCCAACATTGCAATAG 1494 0.4324 MEATCNDNSLASFSHSSPVMSLNGKRLVVDEMDFFAEKKSKKSAVDDQMVDQMELQVDTSLDLLTKSSASNISTMEEGPSEARDDKRNKLVAMLAELHHMNVENQRLRQLVDQVNNKYNALHKHLMELMQKQHKINRATGEKGEKDDMIPRPFFDIGVAIKEETSPRYSKGKLRESKSMIDLIECKTQKICTSIDVVELDPDKLDSGRDSAKSRRDQHESSSDKAIPGRLSSNDVARLSSLREVDQASETMSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCSIGTGCPVRKQVQRSAEDPSVLITTYEGQHNHILPPTAKAMASTTSAAASMLLSGSMPSSDGLIHPNILESAALPFSQSLVTLSTSTPFPTITLDLTQGATNNSSQLLQGAPQDNQHCLLSPLLAQEFMSAQDIFDQTKLSSIHGSQGRETTSFVDTVNAATAAITADPKFRVALMAAITSIIRSSHPNNINGASGDPTLQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0982 497 Gene3D WRKY domain 255 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g0982 497 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g0982 497 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 14 486 IPR044810 GO:0003700
Ssu9g0982 497 SUPERFAMILY WRKY DNA-binding domain 263 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g0982 497 MobiDBLite consensus disorder prediction 202 232 - -
Ssu9g0982 497 Coils Coil 97 131 - -
Ssu9g0982 497 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 14 486 - -
Ssu9g0982 497 Pfam WRKY DNA -binding domain 272 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g0982 497 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g0982 497 MobiDBLite consensus disorder prediction 202 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0982 Ssu-Chr9 39829856 39833676 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0982 26 489 WRKY Transcription Factor Family AT1G62300 42.540 2.18e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu9g0982 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0982 - - gmx:100779533 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0982 9 39829856 39833676 Ssu6g3498 6 77915233 77918322 PCT