Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0981 ATGATCAAGAAAGCCCGCGTATCAGTTCGAGCAAGATCAGCTTTTTCTATGATTTCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGGAATCCATGTCCGCGATCTTATTATCGTTGCTCAATGGGGACTGGTTGTCCAGTTCGGAAGCAAGTACAAAGATGTGCTGTAGATCCAAGTGTGTTGATCACAACATATGAATGGCAGCATAATCATATACTCCCTCCCACTGCCAAGGCAATGGCATCCACCACATCAGCTGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTATACACCCAAACACATTAGAAAGTGCAGCACTTCCATTTTCACAGAACTTGGCAACCCTCTCAACTTTAGCTCCATTTCCAACTATCACTTTGGATCTCACTCAAAGTGCTACCAATAATTGTTCAGAGCTACTACAAGGGGCACCACAGGATAACCAACATTGCCTCCTTTCCCCACTTTTGGCTCAGAATTCTATGTCAGCTCCAAGCATTTTTGACCAAGCTAAGCTTTCTAGCTTACATGGGTCTCACGGAACAGAAAATACTTCATTTGTTGACAGGGTAAATGAAGCAACAGCTGCTATCACCGCAGACCCGAAGTTCAGTGCAGCTCTTGTGGCTGCCATAACGTCTATTATTGGAAGTTTACATCCAAACATTGATGGTACAAGTGGAGACCCAGCATTGCAATAA 735 0.4435 MIKKARVSVRARSAFSMISDGCQWRKYGQKMAKGNPCPRSYYRCSMGTGCPVRKQVQRCAVDPSVLITTYEWQHNHILPPTAKAMASTTSAAASMLLSGSMPSSDGLIHPNTLESAALPFSQNLATLSTLAPFPTITLDLTQSATNNCSELLQGAPQDNQHCLLSPLLAQNSMSAPSIFDQAKLSSLHGSHGTENTSFVDRVNEATAAITADPKFSAALVAAITSIIGSLHPNIDGTSGDPALQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0981 244 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 1 233 - -
Ssu9g0981 244 Gene3D WRKY domain 3 80 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g0981 244 SMART WRKY_cls 18 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g0981 244 ProSiteProfiles WRKY domain profile. 13 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu9g0981 244 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 233 IPR044810 GO:0003700
Ssu9g0981 244 SUPERFAMILY WRKY DNA-binding domain 12 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu9g0981 244 Pfam WRKY DNA -binding domain 20 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0981 Ssu-Chr9 39819705 39822344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0981 2 238 WRKY Transcription Factor Family AT1G62300 54.086 2.90e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu9g0981 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0981 - - gmx:100779533 363.614