Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0962 ATGAAGATGTGGGTTTGGCACCATCGATTGGTGCTTTTCTGCATTGTTTGCGGCCTCTGTTTTTCTCTGCAGTTCACAATGGTTTCTTCAACTTCATCTGCTGCACACACTGATCAtGGTCATGTAGATTCAAATGCTGGAAGAACTTTGAATCAGGAGGGTAGTAATCATCAAATACATTGTTCTAGAGAAAGAAGTAGAGCAGCTTGGAAGATCATTCAAGAGTATTTAATGCCCTttgtggagaaagaaaaatatcacaTCTCAAAAAGGTGTTGGCTTCACCCAGACAATGACATATATAGAGATCAGGAGCAACATAAGTTTCATATAGATATAAATGAATGGCAGTGTGGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGCCACTGCTTAGCAGATGTATGTGGTGCACTGCACTGTGACCATGAAATGAATTCCGGatcaaaaaaatcaaagtgCAATCCTGCTGCTGCTGCAAGAAATAAACATCTATGTGAGACCTTAGCTGATAGTTGTTTTCCAGTCAATGAGGGCCCTGGGGCAAGCCGACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACACAGCTGCACTGGAAGTAGCAAACCTTTCTCTAGAGGGCGCAGGAAGAAGACAAGTGTGTTCTACATCTTTGTGTCTATTTTGCTTGTGATACTGCTGCTACTATACTATCTCTACATTTACTTATATCAAAGGGGAATGAAAGGGGAAACCCAAATGCTGAAGCGCATCTCACAAACCAGCAGAAAGAAAAAGCCGTCCTAA 849 0.3934 MKMWVWHHRLVLFCIVCGLCFSLQFTMVSSTSSAAHTDHGHVDSNAGRTLNQEGSNHQIHCSRERSRAAWKIIQEYLMPFVEKEKYHISKRCWLHPDNDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLSESHCLADVCGALHCDHEMNSGSKKSKCNPAAAARNKHLCETLADSCFPVNEGPGASRLHEFFLHQFCDAHSCTGSSKPFSRGRRKKTSVFYIFVSILLVILLLLYYLYIYLYQRGMKGETQMLKRISQTSRKKKPS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0962 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 141 IPR013087 -
Ssu9g0962 282 MobiDBLite consensus disorder prediction 38 59 - -
Ssu9g0962 282 ProSitePatterns Zinc finger C2H2 type domain signature. 118 139 IPR013087 -
Ssu9g0962 282 PANTHER ZINC FINGER PROTEIN-RELATED 19 282 - -
Ssu9g0962 282 MobiDBLite consensus disorder prediction 38 57 - -
Ssu9g0962 282 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0962 Ssu-Chr9 39483754 39487200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0962 40 282 C2H2 Transcription Factor Family AT5G63280 60.163 7.13e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g0962 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0962 - - gmx:100527694 474.167