Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0949 ATGGAGGGCGTGACAAGCATCAATGATGCAGCCAATGGCGAAAGTGGGTTGCTTGCAATGCTCGGTGGCAATGGCGGCAGcggcggtggtggtggcggtggggGTGGTGGCAATGTGGAAGAGGTGACTTGGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTCATGGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCGGTGCAGAGGAACACAGGGTTGAATAGATGTGGGAAGAGTTGTAGGCTCAGGTGGGCCAACCATTTAAGGCCCAATTTGAAGAAAGGTGCCGTCTCCCCTGAGGAAGAGAAGCTCATTGTTGAACTTCATGCACAGTTTGGCAACAAATGGGCCCGAATGGCTGCTCTGGTAACCTATAGTCTCTAA 399 0.4737 MEGVTSINDAANGESGLLAMLGGNGGSGGGGGGGGGGNVEEVTWKKGPWTTAEDAILMDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAVSPEEEKLIVELHAQFGNKWARMAALVTYSL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0949 132 CDD SANT 48 93 IPR001005 -
Ssu9g0949 132 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 126 - -
Ssu9g0949 132 ProSiteProfiles Myb-like domain profile. 45 93 IPR001005 -
Ssu9g0949 132 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Ssu9g0949 132 SUPERFAMILY Homeodomain-like 47 123 IPR009057 -
Ssu9g0949 132 Gene3D - 103 129 - -
Ssu9g0949 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 132 IPR017930 -
Ssu9g0949 132 Gene3D - 45 98 - -
Ssu9g0949 132 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 126 - -
Ssu9g0949 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 97 IPR017930 -
Ssu9g0949 132 SMART sant 45 95 IPR001005 -
Ssu9g0949 132 SMART sant 98 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0949 Ssu-Chr9 39325729 39327520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0949 45 126 MYB Transcription Factor Family AT2G32460 79.268 4.21e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g0949 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0949 - - lja:Lj6g3v0869180.1 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0949 9 39325729 39327520 Ssu9g0949 9 39325729 39327520 ECH