Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0947 ATGGAGGGCGTGACAAGCATTAATGATGCAGCCAATGGCGAAAGTGGGTTGCTTTCAATGCTCGGTGGCAATGGCGGCAGCGGCggcggtggtagtggtggtggcggtgaggGTGGTGGCAATGTGGAAGAGGTGACTTTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTCATAGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCGGTGCAGAGGAACACAGGGTTGAATAGATGTGGGAAGAGTTGTAGGCTCAGATGGGCCAACCATTTAAGGCCCAATTTGAAGAAGGGTGCCTTCTCCCCTGAGGAAGAGAAGCTCATTGTTGAACTTCATGCACAGTTTGGCAACAAATGGGCCCGAATGGCTGCTCTGTTGCCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACAAGGATCAAGCGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCGGACGACCATGATCACCACCACCGTCCCACAACACCAACCCCTCCCACCACCCCTTCCCCATGCCTCACACCAACAGGCTCAAACCCCAACACCACCACAAACTTTGAGTTCTTCAATCAAAACCACCAACACCAAAACCACTACCaataccaacaacaacaatacccTCTATCTCCAACTGCACCCCACCATTCCCCTCTCACTTCCCCACTCCAACACAGACCCTTCAGCCCCTCACCTCACACCTTCTTAGACCCTTCACCCCTCCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCACCTTCCAAAGACCAGCACCAGTTCTGTGCACCCCTCTTAGCTTCAAGCGCTACCGCGCCTCTCATACCTATAACCACCACCTCCCCGACCCTCCTCTCAATGCCCCGTTGCCTCATCTTGATGGATTCAGGTTCCCGGTTCAGGGTTTTTCTCAGTTTTTTCAGCCCTCCTTGTTAGACTCCGATCGAGGggtctcttcttcttcctcctccgcTTTCGCACCCAGGTTGGAGCTCCCTTCAAACCAGTTCTATAAACGCCCCAAGAGCCCGAGATTAAGCTTGACATTGAGTTCAATGACCCTGGTTTTCAAACTAGCAGTGGCTCGCTGGGGACCTTCTCTTCGAGGCTCAGGCACTGGCCTCGGGCCAGAACTCAAAGAAACGAGGGTACTTGAGTTTGAATGA 1188 0.4924 MEGVTSINDAANGESGLLSMLGGNGGSGGGGSGGGGEGGGNVEEVTLKKGPWTTAEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHHHRPTTPTPPTTPSPCLTPTGSNPNTTTNFEFFNQNHQHQNHYQYQQQQYPLSPTAPHHSPLTSPLQHRPFSPSPHTFLDPSPLPLSSSSPSPLSFTFQRPAPVLCTPLSFKRYRASHTYNHHLPDPPLNAPLPHLDGFRFPVQGFSQFFQPSLLDSDRGVSSSSSSAFAPRLELPSNQFYKRPKSPRLSLTLSSMTLVFKLAVARWGPSLRGSGTGLGPELKETRVLEFE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0947 395 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Ssu9g0947 395 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Ssu9g0947 395 MobiDBLite consensus disorder prediction 157 250 - -
Ssu9g0947 395 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 354 - -
Ssu9g0947 395 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Ssu9g0947 395 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 354 - -
Ssu9g0947 395 CDD SANT 51 96 IPR001005 -
Ssu9g0947 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Ssu9g0947 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Ssu9g0947 395 MobiDBLite consensus disorder prediction 182 235 - -
Ssu9g0947 395 SUPERFAMILY Homeodomain-like 47 143 IPR009057 -
Ssu9g0947 395 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Ssu9g0947 395 CDD SANT 104 145 IPR001005 -
Ssu9g0947 395 MobiDBLite consensus disorder prediction 18 44 - -
Ssu9g0947 395 Gene3D - 48 101 - -
Ssu9g0947 395 SMART sant 48 98 IPR001005 -
Ssu9g0947 395 SMART sant 101 149 IPR001005 -
Ssu9g0947 395 Gene3D - 104 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0947 Ssu-Chr9 39272158 39274111 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0947 29 186 MYB Transcription Factor Family AT4G26930 65.625 1.42e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g0947 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0947 - K09422 gmx:102659401 446.432