Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0944 ATGTTCTCTCCCTCAAAACCCCACCCCTCTCCGGTTCGCCCCGCCCTCGCTCCGGTTCGCTGCGGCGTCCGCGACCTCCGCGAACGAATCCAGACCGTCCGCACCGCGCAAAAGATCACCGAAGCCATGAAACTCGTCGCGGCAGCCCGAGTCCGCCGCGCCCAGGAGGCCGTCGTCAACGGCCGCCCCTTCTCCTCAGCCCTCGCGGCAGTGCTAAACGACATCACCCGGCGCCTCCAAAACGACGACGTCTCCACCCCTCTCACCGAGACCAGGCCCGTGAAAAACGTCGCCCTCGTCGCCATCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAAATCATTGATCAAAAAAGCCGTCGCCCGAATCGAGGAGTTGAAGAAACTCGGCTTGGGGTGCGTTGTCATCAGCGTCGGCAAAAAGGGTAACTCGTTTTTTAGTCAAAACCGCGACCCTTTTGTCGAAGTTGATAGCTTTATCGAAATTGGGGGTTTTCCCACCACCAAGGAGGCTCAGGTCATTGCCGATGATGTTTTTTCGTTGTTTGTGAGTGAGGAGGTTGATAGGGTTGAGCTTGTGTACACAAAGTTTGTGTCATTGGTTAGGTTTGACCCTGTGATTCACCCTTTGTTGCCTTTGGGAGAGGTTTGTGATATGAATGATGAGGTTTTTAGGTTGAGTAGTAAAGGTGGGAAATTGGCTGTGGAGAGGGATGTTGTGAGGGTGAGGAAAGAGGGTGAGGTGGTTACTCCTCTTATGGAGTTTGAGCAGGAGCCTGTTCAGATTCTTGATGCCATGTTGCCTCTGTATTTGAATAGTCAGGTTTTGAGGGGGTTGCAGGAGTCTCTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCGACCGCCACGGATAACGCGGTGGAGCTGGGGAGGAGGCTCTCGGTTGCGTACAATCGGGAGCGGCAGGCGAAGATCACTGGGGAGTTGTTGGAGATTGTGGCTGGGGCTGAGGCACTAACACAAATTGACTGA 1020 0.5559 MFSPSKPHPSPVRPALAPVRCGVRDLRERIQTVRTAQKITEAMKLVAAARVRRAQEAVVNGRPFSSALAAVLNDITRRLQNDDVSTPLTETRPVKNVALVAITGDRGLCGGFNKSLIKKAVARIEELKKLGLGCVVISVGKKGNSFFSQNRDPFVEVDSFIEIGGFPTTKEAQVIADDVFSLFVSEEVDRVELVYTKFVSLVRFDPVIHPLLPLGEVCDMNDEVFRLSSKGGKLAVERDVVRVRKEGEVVTPLMEFEQEPVQILDAMLPLYLNSQVLRGLQESLASELAARMGAMATATDNAVELGRRLSVAYNRERQAKITGELLEIVAGAEALTQID 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0944 339 ProSitePatterns ATP synthase gamma subunit signature. 321 334 IPR023632 -
Ssu9g0944 339 PANTHER ATP SYNTHASE GAMMA CHAIN 7 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 23 335 IPR035968 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 23 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 Gene3D - 46 287 - -
Ssu9g0944 339 Hamap ATP synthase gamma chain [atpG]. 20 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 CDD F1-ATPase_gamma 24 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 Pfam ATP synthase 23 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 PRINTS ATP synthase gamma subunit signature 282 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 PRINTS ATP synthase gamma subunit signature 313 334 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu9g0944 339 Gene3D ATP synthase, gamma subunit, helix hairpin domain 288 330 - -
Ssu9g0944 339 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 7 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0944 Ssu-Chr9 39248167 39249186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0944 19 335 Primary Pumps ATPases AT1G15700 67.477 3.25e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0944 K02115 - gmx:100797879 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0944 9 39248167 39249186 Ssu9g0944 9 39248167 39249186 ECH