Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0941 ATGCCCTCTGCCCAGGATCCATTTTACTTTGTCAAGGCCGAGATTCAAGATtcgATTGATAAGTTGCAATCTACTTTTCACCAATGGGAAAGCACTTCCGACCCCACGGAACAAGGACATCTTCCAAAGGCGGTTCTTGCTGGTTGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCCTCGAGAGATccttcttggtatggaattgaTGAAGTGGAGCTTGAAAGCCGGAGGAGATGGACAAGCAGTGCTCGTACTCAGGTTGGCACAATGAAGAAAGTAGTGGAAGCTGGAAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGGGAACTATTGAAACTACCAAATTCTCATCAAACTGATACCTCCAACCAGTATGCTGCGCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAAATGCTTCTTATAAAGAAACAAGATGAGGAGTTGGATGAGCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCCTTTCACAGGAAAAGATTATAGATGAACTTGGTTCTGAGATGGACAGCACAACAAATCGTCTTGATTTTGTCCAAGTGAGTTTatgcatctatttttcatttctcctTCAAATCGCCTAG 675 0.403 MPSAQDPFYFVKAEIQDSIDKLQSTFHQWESTSDPTEQGHLPKAVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEVELESRRRWTSSARTQVGTMKKVVEAGKGSSTTSHASVNGMRRELLKLPNSHQTDTSNQYAAQDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELLSQEKIIDELGSEMDSTTNRLDFVQVSLCIYFSFLLQIA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0941 224 CDD SNARE_Qc 157 213 - -
Ssu9g0941 224 SMART tSNARE_6 149 216 IPR000727 -
Ssu9g0941 224 PANTHER SYNTAXIN PROTEIN 1 213 - -
Ssu9g0941 224 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 207 IPR000727 -
Ssu9g0941 224 PANTHER SYNTAXIN 1 213 IPR045242 -
Ssu9g0941 224 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Ssu9g0941 224 SUPERFAMILY t-snare proteins 5 99 IPR010989 GO:0016020|GO:0016192
Ssu9g0941 224 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu9g0941 224 Gene3D - 156 214 - -
Ssu9g0941 224 Gene3D - 2 104 - -
Ssu9g0941 224 SUPERFAMILY SNARE fusion complex 152 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0941 Ssu-Chr9 39204184 39207668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0941 55 210 SNARE and Associated Proteins AT1G28490 69.231 1.74e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0941 K08500 - gmx:100787129 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0941 9 39204184 39207668 Ssu6g3470 6 77533150 77536201 PCT