Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0939 ATGGTTGATTTGGAAATCCCGGTCCCCACCCAATTTGACCCATTTGCTGAGGCTAGAGAATCGGATGCCCCTGGAGCGAAGGAGTATGTCCATATCCGGATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGGAGGAGTTCAGTTACGGGAAGATCCTGAAGGACCTCAAGAAAGAGTTCTGCTGCAACGGGAATGTGGTGCAGGACAAGGAGCTTGGCAAGATAATCCAACTCCAAGGTGACCAGCGCAGGAACGTCTCCCAGTTCCTGGTTCAGGCCCGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTAA 339 0.5162 MVDLEIPVPTQFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKEEFSYGKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRRNVSQFLVQARLVRKDQIKIHGF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0939 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Ssu9g0939 112 Gene3D - 2 112 - -
Ssu9g0939 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Ssu9g0939 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Ssu9g0939 112 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 112 - -
Ssu9g0939 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Ssu9g0939 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 112 IPR005874 GO:0003743
Ssu9g0939 112 Pfam Translation initiation factor SUI1 27 99 IPR001950 GO:0003743|GO:0006413
Ssu9g0939 112 PIRSF Transl_init_SUI1_Euk 2 112 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0939 Ssu-Chr9 39184818 39185156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0939 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 79.464 2.56e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0939 K03113 - gmx:100791423 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0939 9 39184818 39185156 Ssu6g3469 6 77529134 77529475 PCT