Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0938 ATGGGTTGTTGTCTCAGTAAAGATTCAGAGCCAGAACAGAATGGTTACAGACATGCTGGGTCTGGTGGTGTGCAAAACCAGAAAACTCATCATGAACCTTTGGTCAACCAATCAAGAGCGCCTGCAAATCAACCTTATCATTTACCTGAAAAGCATGTCCATGCTGCATCCACTGCTCAGACAGTGCCTCAGATGCCGTGGAAGCCTTCTGGTCCCGCCCCTAGTCCAAAACCTGTTGGTAGTGTTAAGCATGACACAATTCTTGGGAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTTGGGAAGGAATTGGGTAGAGGTCAATTTGGGGTGACATATCTCTGCACTGAGAATTCAACTGGGTTGCAGTATGCCTGCAAGTCCATTTCTAAGAGGAAACTTGTGAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCCAACATAGTTGAGTTCAAAGGGGCTTATGAGGATAGGAACTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGGGAGCTTTTTGATAGGATCATTGCCAAGGGGCATTACAGTGAGAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGCTATCTAGTAGGGATGAAAATACACTTCTCAAGGCAACTGATTTTGGCTTGTCCGTTTTCATTGAAGAAGGAAAGGTGTATCGGGATATAGTTGGAAGCGCTTACTATGTTGCTCCTGAAGTTTTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATATTTGATGCTATATTGGAAGGTCACATTGATTTTGAAAGTGACCCATGGCCTAAGATTTCAAACAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACCTCTGCTCAAGTTCTtgAGCACCCATGGATTAAAGATGGAAATGCTTCAGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACCAGAGCGGTACAATCACCTATGAAGAACTAAAGGCGGGATTGCATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGATGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACATAAGATAGAAAGAGATGACCAACTTTTCAAGGCCTTccaatattttgataaagacAACAGTGGGTATATTACAAGAGATGAATTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATAAAGGAAATCATATCTGAAGTTGATACAATAATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTACGAAGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAACAAGGCAAGCTATTCTGA 1662 0.4176 MGCCLSKDSEPEQNGYRHAGSGGVQNQKTHHEPLVNQSRAPANQPYHLPEKHVHAASTAQTVPQMPWKPSGPAPSPKPVGSVKHDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENTLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESDPWPKISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDQSGTITYEELKAGLHRLGSKLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHKIERDDQLFKAFQYFDKDNSGYITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQQGKLF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0938 553 Gene3D - 365 549 - -
Ssu9g0938 553 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0938 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 547 - -
Ssu9g0938 553 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Ssu9g0938 553 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0938 553 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Ssu9g0938 553 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0938 553 Gene3D Transferase(Phosphotransferase) domain 1 185 364 - -
Ssu9g0938 553 Pfam EF-hand domain pair 474 543 IPR002048 GO:0005509
Ssu9g0938 553 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Ssu9g0938 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Ssu9g0938 553 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Ssu9g0938 553 SUPERFAMILY Protein kinase-like (PK-like) 98 378 IPR011009 -
Ssu9g0938 553 ProSitePatterns EF-hand calcium-binding domain. 526 538 IPR018247 -
Ssu9g0938 553 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Ssu9g0938 553 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Ssu9g0938 553 ProSiteProfiles EF-hand calcium-binding domain profile. 513 548 IPR002048 GO:0005509
Ssu9g0938 553 SUPERFAMILY EF-hand 380 544 IPR011992 -
Ssu9g0938 553 CDD EFh 404 463 IPR002048 GO:0005509
Ssu9g0938 553 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Ssu9g0938 553 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 52 547 - -
Ssu9g0938 553 MobiDBLite consensus disorder prediction 1 81 - -
Ssu9g0938 553 CDD EFh 475 543 IPR002048 GO:0005509
Ssu9g0938 553 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Ssu9g0938 553 MobiDBLite consensus disorder prediction 19 43 - -
Ssu9g0938 553 CDD STKc_CAMK 98 356 - -
Ssu9g0938 553 SMART efh_1 475 503 IPR002048 GO:0005509
Ssu9g0938 553 SMART efh_1 439 467 IPR002048 GO:0005509
Ssu9g0938 553 SMART efh_1 517 545 IPR002048 GO:0005509
Ssu9g0938 553 SMART efh_1 403 431 IPR002048 GO:0005509
Ssu9g0938 553 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0938 Ssu-Chr9 39174339 39178834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0938 1 553 EF-hand Containing Proteins AT3G20410 73.345 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu9g0938 Pkinase 4.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0938 K13412 - gmx:100798651 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3465 6 77473808 77478335 Ssu9g0938 9 39174339 39178834 ECH
Ssu9g0938 9 39174339 39178834 Ssu9g0938 9 39174339 39178834 ECH