Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0894 ATGGAGCCATCACATGACACCATCATCGAAGTCAAAGAAGAACTCATGGTTTCTCCATTATCTGGTGAAAATGCAGTTCATAGAACTGCTTATTTCATCAAACCTTGCATGGAAGAGTCAGCACGTCTTCCTCGTTCCATGTTCTCTTTTGGAAGAACAGCCGCTGCAACTTCAGACCATGCAAAGGTTGCACCACTAGAACTGGAAATGGCTTTGCATGGCGCCCATATGAGAATTCTCCACCCCGTATGCTCTTCAATGAAAAAGACATGTACTATTGATGCCAAGGAGATGAATGTTGCCACGAGGGCCCTTGGATTTGAGATGACAGAAGAGGGAAAGATATCTGCATCAGACATCAAGCGCATTGCAAAAGAGCTAGGTCAAAATTTCACTGACAGAGATATTCAGGAGATGGTTGATGAAGCAGACCAAGATAATGATCGAGAGGTTAGTGCAGAGGAAGGAGGGCTCATAGGCCTTGAAGAAAGAGGAAGCAAAAGAAACCATGTGAGACGGAAAAGATTCTCAGAATCTAGAAGATCAACGTGGTATTTTGAAGGGACAAGTTGTCTCCTTTACTTTGCAAGCTTTAGAGTTTGGATAACAGATTTTATGTTGTCAAAGATAAAGACCAGTGCTGAAAACTTGAACAAATATGTTGTAGATAGTAGCAAGCGAAGGTTCGTAACAGAAGAGCTAGCAAAGCTTGGGAAAGCAAACGTTACCTCTAAGAGTTTTTCTTACCGTGAGCTATGTGTTGCAACTCAGAACTTTCACCCTGCCAATATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGACACCTTAAAGGAACAAATCAAGTTGTTGCTGTGAAGCAACTTGACAGGAATGGATTTCAAGGAAACAGGGAATTTCTTATAGAGGTTTTGATTTTGAGTCTTTTGCACCACCCTAACCTTGTCAACTTGGTAGGGTACTGTGTTGAAGGTGATCAGAGAATTTTGGTATATGAATACATGGTGAATGGTTCTTTAGAAGATCACTTACTTGaATTAACTCCAGATAGAAAGCCTTTGGACTGGCAAACTAGAATGAAAATTGCAGTGGGTGCAGCAAAAGGACTTGAATACTTGCATGAAGAAACAAACCCGCCAGTGATATACCGCGATTTCAAGGCATCAAACATACTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGAGATAGAAAACATGTATCCACCAGAGTGATGGGAACATATGGCTATTGTGCTCCTGAGTATGCATCAACAGGACAGTTGACTACAAAATCAGATGTGTACAGCTATGGAGTAGTGTTTTTGGAGATGATCACAGGAAGAAGAGTAATTGAATTTTCAAGACCATCAGAAGAGCAAAATTTAGTCACTTGGGCACAACCACTTCTTAAAGATAGAAGGAAATTTACACTAATGGCTGATCCATTGCTAGAAGATAACTACCCGGTAAAGAGCCTATACCAAGCTCTAGCGGTAGCAGCGATGTGTCTTCAAGAGGAAGCTGATACTCGACCTTTGATCAGTGATGTAGTTACAGCCATTGAGTTTTTAGCAAGGAAGACAGTAGAAGTGGATGAACCACTACATACAGAAGAGACTTCTCCTCCTCAGGATGGAGATAGCAGTGAACACAATGAATCTAATGAAGAAGATGACGACAACGATGATGACGAAGAGGACAATGATGGCGGCAACGACAACAATGACGATGACGATGAGAAtgagaaggaggaggagaataAGAACAATGATATCATCAAAAAAGAATAG 1827 0.4083 MEPSHDTIIEVKEELMVSPLSGENAVHRTAYFIKPCMEESARLPRSMFSFGRTAAATSDHAKVAPLELEMALHGAHMRILHPVCSSMKKTCTIDAKEMNVATRALGFEMTEEGKISASDIKRIAKELGQNFTDRDIQEMVDEADQDNDREVSAEEGGLIGLEERGSKRNHVRRKRFSESRRSTWYFEGTSCLLYFASFRVWITDFMLSKIKTSAENLNKYVVDSSKRRFVTEELAKLGKANVTSKSFSYRELCVATQNFHPANMIGEGGFGRVYKGHLKGTNQVVAVKQLDRNGFQGNREFLIEVLILSLLHHPNLVNLVGYCVEGDQRILVYEYMVNGSLEDHLLELTPDRKPLDWQTRMKIAVGAAKGLEYLHEETNPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDRKHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSYGVVFLEMITGRRVIEFSRPSEEQNLVTWAQPLLKDRRKFTLMADPLLEDNYPVKSLYQALAVAAMCLQEEADTRPLISDVVTAIEFLARKTVEVDEPLHTEETSPPQDGDSSEHNESNEEDDDNDDDEEDNDGGNDNNDDDDENEKEEENKNNDIIKKE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0894 608 CDD STKc_IRAK 265 534 - -
Ssu9g0894 608 ProSiteProfiles Protein kinase domain profile. 259 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0894 608 CDD EFh 113 155 IPR002048 GO:0005509
Ssu9g0894 608 Gene3D Phosphorylase Kinase; domain 1 219 335 - -
Ssu9g0894 608 Gene3D Transferase(Phosphotransferase) domain 1 336 552 - -
Ssu9g0894 608 PANTHER OS07G0668900 PROTEIN 204 553 - -
Ssu9g0894 608 SUPERFAMILY EF-hand 89 155 IPR011992 -
Ssu9g0894 608 Gene3D - 111 156 - -
Ssu9g0894 608 PANTHER RECEPTOR SERINE/THREONINE KINASE 204 553 - -
Ssu9g0894 608 Pfam Protein kinase domain 261 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0894 608 MobiDBLite consensus disorder prediction 544 562 - -
Ssu9g0894 608 SUPERFAMILY Protein kinase-like (PK-like) 243 535 IPR011009 -
Ssu9g0894 608 MobiDBLite consensus disorder prediction 563 597 - -
Ssu9g0894 608 MobiDBLite consensus disorder prediction 544 608 - -
Ssu9g0894 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Ssu9g0894 608 ProSitePatterns Protein kinases ATP-binding region signature. 265 288 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0894 Ssu-Chr9 38310130 38321288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0894 241 569 Glycoside Hydrolase AT3G07070 66.261 1.20e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu9g0894 Pkinase 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0894 - - gmx:100790474 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0894 9 38310130 38321288 Ssu9g0894 9 38310130 38321288 ECH
Ssu9g0894 9 38310130 38321288 Ssu6g3434 6 76986600 76989380 PCT