Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0891 ATGTCGCCGAGCTTCGTGTTCGATCCCCCCAGCGACGAAGAAGTCGAACTCTCCGAAcgcgaagaagaagaagaagacgaagaagaagaagaagaagctgaGTCAGGGTCAGAACCAGAGTCAGAAGAAGAAGAGCACAAAGAAGCGCGGGTTTCGAAGAAGAAAACGCAGTCTCCATGGGACTTCGCTAAATACACGGAATCGGTGGCCGAGGAACACGCTCGCAGGAGCACGACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAGACAACGTTCCACGCCGCTCGTTTCTGCACCCGACTACAGCTCCGAGTCCGAACCTGATGAACAAGAAGATTATAGACCGGAGGAAGAAGATGAGGAAGAGGGTAATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCCATGCCGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCCTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTcagGCAGCATGTATTCCATTGGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGTTCAGGGAAGACAGCTGCATTTGCATTGCCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCATGCTATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAAACTATGCTGTTTTCGGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCGCTGTCAAAGCCCTTGCGCCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAggTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGTTCCAAAACTTTTACTTCGAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCCGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTAGAACAGTTCAGGAAGCAGCAAGTGGAATTTTTGGTTGCAACAGATGTGGCTGCCCGTGGTCTCGACATTATTGGTGTTCAAACAGTtatcaactttgcatgtccacgtGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAGGCCATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCTGAGCAATCTATACTTAAGTGGTCTCATATAATTGAGCAAATGGAGGACCAAATTGCTGAAGTACTTCAAGAAGAGAGAGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCAACAAAGGCCGAAAACATGATTGCACATAAGGAAGAGATCTATTCTCGCCCCAAAAGAACCTGGTTTGTCacagagaaggagaaaaagctTGCCGCAAAAGCATGCAAAGGTACGATATTTTCTGGGAAAGAGGTAATTAGTGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGAAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAGGAAGAGGAGCAGGATGACAAACAAGTAGATGCTAAGGGgacaagtaaaaaggaaaaGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCATTAGATGCTGGCAAGATTGTGAAGAAGAGTAAAAAGAAATCTAATAATCCTTCCCGAAAAAGTCCTTCAAGGACAGAAGAGATGCGTGAGCTGTTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGTGTTGGAGCAGGAAAGAAGTCAAAGAGCTCATTCAAAAGCAAGTCaagGTACAAGCGCAAGTAG 2241 0.4364 MSPSFVFDPPSDEEVELSEREEEEEDEEEEEEAESGSEPESEEEEHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVSAPDYSSESEPDEQEDYRPEEEDEEEGNGGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVEFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQIAEVLQEEREERVLRKAEMEATKAENMIAHKEEIYSRPKRTWFVTEKEKKLAAKACKGTIFSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEEEEQDDKQVDAKGTSKKEKGGMSLVDLAYRRAKAVKAVKKALDAGKIVKKSKKKSNNPSRKSPSRTEEMRELFQTDMKDKKPKRRGVGAGKKSKSSFKSKSRYKRK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0891 746 Coils Coil 629 652 - -
Ssu9g0891 746 SMART helicmild6 399 484 IPR001650 -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 680 746 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 631 659 - -
Ssu9g0891 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Ssu9g0891 746 SMART ultradead3 163 364 IPR014001 -
Ssu9g0891 746 Gene3D - 107 351 IPR027417 -
Ssu9g0891 746 Coils Coil 529 569 - -
Ssu9g0891 746 Pfam DEAD/DEAH box helicase 168 338 IPR011545 GO:0003676|GO:0005524
Ssu9g0891 746 CDD SF2_C_DEAD 361 493 - -
Ssu9g0891 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 523 IPR001650 -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 105 125 - -
Ssu9g0891 746 PANTHER BNAA01G17110D PROTEIN 50 275 - -
Ssu9g0891 746 Gene3D - 370 595 IPR027417 -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 700 723 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 40 57 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 724 746 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 609 666 - -
Ssu9g0891 746 CDD DEADc_DDX27 155 350 - -
Ssu9g0891 746 PANTHER BNAA01G17110D PROTEIN 300 726 - -
Ssu9g0891 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 504 IPR027417 -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 1 134 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 66 89 - -
Ssu9g0891 746 MobiDBLite consensus disorder prediction 12 39 - -
Ssu9g0891 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 349 IPR014001 -
Ssu9g0891 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Ssu9g0891 746 Coils Coil 11 34 - -
Ssu9g0891 746 Pfam Helicase conserved C-terminal domain 381 484 IPR001650 -
Ssu9g0891 746 PANTHER RNA HELICASE 300 726 - -
Ssu9g0891 746 PANTHER RNA HELICASE 50 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0891 Ssu-Chr9 38236824 38245224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0891 132 501 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 1.34e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0891 K13181 - gmx:100776684 1088.56