Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0855 ATGACATGCAGCAATTTCTTATCTCAGCAACAACGCACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTGGATAACTCTGGCGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACGATAATAGCATCCGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTGGTTGTGCGTGCAGCAATGCAAAGGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTCTTTGGACCAGTGCCTCATGAGCTGAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAA 402 0.4677 MTCSNFLSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0855 133 Gene3D Ribosomal protein L14 14 133 IPR036853 GO:0003735|GO:0005840|GO:0006412
Ssu9g0855 133 Pfam Ribosomal protein L14p/L23e 15 132 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu9g0855 133 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 2 133 - -
Ssu9g0855 133 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 2 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu9g0855 133 TIGRFAM rplN_bact: ribosomal protein uL14 15 132 IPR005745 GO:0003735|GO:0006412|GO:0015934
Ssu9g0855 133 SMART Ribosomal_L14_2 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu9g0855 133 ProSitePatterns Ribosomal protein L14 signature. 71 97 IPR019972 -
Ssu9g0855 133 Hamap 50S ribosomal protein L14 [rplN]. 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu9g0855 133 SUPERFAMILY Ribosomal protein L14 15 132 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0855 Ssu-Chr9 37308165 37308805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0855 25 116 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 2.56e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0855 K02874 - gmx:100818301 240.736