Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0853 ATGGAGCTTCCCAATCAAGCTCAAGAAGGGTCTTCTCAAAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGGTTGCTGAAGAAAGCTTATGAATTATCAGTTTTGTGTGATGCTGAAGTTGCTCTAGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCAACTATTGAAAGGTACAAAAAGGCATCTGCTGCTTCCTCAAACTCAGAATCCGTATCTGAAGCTAATACACagTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGAGACATTCAGAATCTAAACAGGCACATCCTTGGCGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACTTTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAGAACCACAATAATTATTTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGCCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATATGACAGGaattttttccctataaatcTCATAGGTTCTGATCAACAATACTCTCGTCAAGACCAGACTGCTCTCCAACTTGTCTGA 723 0.4163 MELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKASAASSNSESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMMPGTLCESLPSQSYDRNFFPINLIGSDQQYSRQDQTALQLV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0853 240 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Ssu9g0853 240 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Ssu9g0853 240 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu9g0853 240 Coils Coil 175 195 - -
Ssu9g0853 240 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 MobiDBLite consensus disorder prediction 1 21 - -
Ssu9g0853 240 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 Gene3D - 28 125 IPR036879 GO:0003677|GO:0046983
Ssu9g0853 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 203 - -
Ssu9g0853 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 Coils Coil 105 125 - -
Ssu9g0853 240 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Ssu9g0853 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 11 203 - -
Ssu9g0853 240 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0853 Ssu-Chr9 37250964 37262723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0853 1 240 MADS-box Gene Family AT3G58780 68.952 2.52e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu9g0853 K-box 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0853 K09264 - gmx:100808734 434.876