Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0843 ATGGACAAACATTCTGGGGATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGAGATTTCCTCGCTTAATGCTCAAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCACGTGCCACTGATGTGTTCCATGATTCAAGTGATGTGAGCTTGTTTTCCAGTTCACTGCCTGTTCTTCCACATGAAAAGTTCGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAATGCAATTGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAATCCCAAGAGTGCCTTAATATTGGTATGTCCAAGATAAGCTTATCAGATGGAATTGCTTCAAATGGTATTGGTCACTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAACGTCGAGGACTCTGAATTACGAACACTATTTGAGcaATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTACGACATTCGAGCTGCTCGCACTGCTATGCGTGCTTTACAGAACAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACaccataaatttattgaattttatgacGTTAGAGCAGCAGAGGCAGCTCTTAGAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGGTCGAACTTTTAGACATCAAGTAGGTTCTCCTGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACATAATCCATTAGGTTCCTTTAGCAAGTCCCCTGGTTTAGGTCATACCAGTCCCATTACTACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTGCGAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAATCTAAATGCTAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTATTCTGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTCATCACAGTCCTTTTCTTGGCTCCCACTCCCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGTTTCTCTCATTAGCCCAGTTGCATTTGGGAATTTAAATCATGGTGATGGGAATTTTATGATGAACATGAGTGCTCGTGCATCCGTAGGAGCTGGTGTTGGCCTTTCAGGAAATACCACTGAAATTAATTCACCCAATTTCAGAATGATGTCACTGCCTCGGCATGGCCCCTTGTTCCATGGAAATAGTTCGTATTCTGGACCAGGAGCAACTAGCATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGACAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTAGACAAAATTGTCAGCGGTGAAGAAACAAGGACTactttaatgattaaaaacatTCCTAACAAGTATACTTCAAAGATGCTACTTGCTGCAATTGATGAGAATCACCGTGGTACTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAATAGCGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACACTTTCTATCCAGCAATTTGAACATATGCATTCGTCAACCAGATGGATCTTATTCAGGCGATTTGTCGGAGAGCCCGAAGGGCAATTCGGATCAGAAGCTAGAGAATGATTAA 2535 0.4249 MDKHSGDSSSAHAAAGPSEISSLNAQKKVGSSAWGIPRATDVFHDSSDVSLFSSSLPVLPHEKFDDNLLTLDKVHKEDEGHDPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFESQECLNIGMSKISLSDGIASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEGRTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHTSPITTNHLSGLAAILSPHATTSTKIAPIGKDPGRAANQMFANSGSTQGAAFQHSMSFPEQNLNASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSVQRQGFPYTSHHSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEVSLISPVAFGNLNHGDGNFMMNMSARASVGAGVGLSGNTTEINSPNFRMMSLPRHGPLFHGNSSYSGPGATSIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIVSGEETRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSGDLSESPKGNSDQKLEND 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0843 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 339 IPR000504 GO:0003723
Ssu9g0843 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Ssu9g0843 844 CDD RRM1_MEI2_like 186 262 IPR034453 -
Ssu9g0843 844 Pfam RNA recognition motif 2 684 780 IPR007201 -
Ssu9g0843 844 MobiDBLite consensus disorder prediction 11 27 - -
Ssu9g0843 844 Gene3D - 176 270 IPR012677 -
Ssu9g0843 844 SMART rrm1_1 686 762 IPR000504 GO:0003723
Ssu9g0843 844 SMART rrm1_1 273 341 IPR000504 GO:0003723
Ssu9g0843 844 SMART rrm1_1 188 256 IPR000504 GO:0003723
Ssu9g0843 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Ssu9g0843 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 260 IPR000504 GO:0003723
Ssu9g0843 844 PANTHER PROTEIN MEI2-LIKE 2 8 839 - -
Ssu9g0843 844 SUPERFAMILY RNA-binding domain, RBD 686 771 IPR035979 GO:0003676
Ssu9g0843 844 Gene3D - 271 368 IPR012677 -
Ssu9g0843 844 SUPERFAMILY RNA-binding domain, RBD 184 347 IPR035979 GO:0003676
Ssu9g0843 844 CDD RRM2_MEI2_like 271 341 - -
Ssu9g0843 844 MobiDBLite consensus disorder prediction 1 27 - -
Ssu9g0843 844 CDD RRM3_MEI2_like 687 772 IPR034454 -
Ssu9g0843 844 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 839 - -
Ssu9g0843 844 MobiDBLite consensus disorder prediction 824 844 - -
Ssu9g0843 844 MobiDBLite consensus disorder prediction 467 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0843 Ssu-Chr9 36981745 36988671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0843 182 495 Eukaryotic Initiation Factors Gene Family AT3G16380 24.496 2.35e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0843 - - gmx:100812324 1549.26