Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0826 ATGGTCACCTTCAGGTTTCACCATCACCAGGTTGTGGGGAGAGCTCTTCCCAAGGAAACTGATGTGCATCCTAAGATCTACATGATGAAGCTGTGGGCCACCAATGAGGTGCTTCTTGAGAAAGCTAAAGAAGGTGAAGAAAGCAATGGCCAAATGCTAGCCATCAATGAGatttttgagaaaaatcctACCAAGATTAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCAAGATACTACTCTAAACGGCGTTGTTGAACAAATGTACAACGAAATGGTATTTCGTCAGGGTCAGGCATCCATGCATCCAGATCATTAA 354 0.4153 MVTFRFHHHQVVGRALPKETDVHPKIYMMKLWATNEVLLEKAKEGEESNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYQDTTLNGVVEQMYNEMVFRQGQASMHPDH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0826 117 Gene3D - 63 112 - -
Ssu9g0826 117 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 107 - -
Ssu9g0826 117 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 107 IPR028877 -
Ssu9g0826 117 SUPERFAMILY RplX-like 63 104 - -
Ssu9g0826 117 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 61 IPR028877 -
Ssu9g0826 117 Gene3D - 1 62 - -
Ssu9g0826 117 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 104 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0826 Ssu-Chr9 36156569 36158760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0826 1 107 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 73.043 2.28e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0826 K02882 K22683 gmx:100306365 186.037