Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0819 atgaatgcTAAGGTACATAGCTCCGATGATACCAAAAAGGATGAAGACGTTGTGCTTCCTGGCTTTAGATTCCACCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGCTGAGAAAGGTGGAAAAGAAGCCTCTTCGAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAATTCTTTTGGGGAAAAAGAATGGTATTTTTTCTGCTTAAGAGGAAGAAAGTACAGGAACAGCGTGAGGCCTAACAGGGTAACCAGGTCAGGGTTCTGGAAAGCCACAGGGATTGACAAGTCCATATATTGTGTGAAAGAACCCCACGAATGCATTGGCCTCAAGAAGTCATTGGTCTACTACCGTGGAAGTGCTGGCAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGTCTTCCACCCAATGCTAATGCTGCCAATGACGTTCTAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGCACCCCATCTTTCAAAAAGTACACTCCAAATTTGAAAGACTCAACACCGGTCACCAAACCAAACCCAGTGAATTCCAACACATGCACCTTAGATTCTGAAAATTGCAAGCCATATTTGATTTGCAGAGACCCCGTAGTGATGCAACAAATAGACAGAAAACCGGTTATTGGACAGGTTGATGAAAAGAAACACTTGTTTCTGGGCCAGTTTGGCCCAGTACCCCATCATCAGGCCCCATCAACCCCTTACCCAAGTTCTTGGAATCAGAACGTTGAGGATTATGCATTTGCCAATGAGAATTGGGATGACCTAAGATCTGTGGTTCAGTTTGCCATTGATCCATCTTCGGTGTTTGATTGTACAGAAACATATGTACCACCCTACTTTTCTTAG 903 0.433 MNAKVHSSDDTKKDEDVVLPGFRFHPTDEELVGFYLLRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSFGEKEWYFFCLRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNANAANDVLEAEVWTLCRIFKRTPSFKKYTPNLKDSTPVTKPNPVNSNTCTLDSENCKPYLICRDPVVMQQIDRKPVIGQVDEKKHLFLGQFGPVPHHQAPSTPYPSSWNQNVEDYAFANENWDDLRSVVQFAIDPSSVFDCTETYVPPYFS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0819 300 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Ssu9g0819 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 292 - -
Ssu9g0819 300 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
Ssu9g0819 300 PANTHER - 3 292 - -
Ssu9g0819 300 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Ssu9g0819 300 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0819 Ssu-Chr9 35561600 35568003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0819 8 171 NAC Transcription Factor Family AT5G39820 59.239 4.93e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu9g0819 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0819 - - gmx:100819795 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0819 9 35561600 35568003 Ssu9g0819 9 35561600 35568003 ECH
Ssu9g0819 9 35561600 35568003 Ssu6g3366 6 76037049 76040697 PCT