Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0790 ATGGTGCCTAATTTTCTTCTCATTGCAAGATTAActgcatcatcatcatcattcacACGTTACAAGAGCACCCGTTTCCAATTGGGTTCGCATTCTCCGCTGCAACACAAACACAATGCTTCACTTTTTAACTTCAACTCTTTCACTTCTGCTAGAAACCATCACAAAGGTGACACCTTTACCGTGTCTTACCTAGTCAACTCGTGTGGGGTGTCCCCAACACTGGCCAGCACACTCTCCAACAGGCTCAATTTGAAAAACCCTGATGGCCCAGATGCTGTTATTGATCTTCTCAACAACTATGGGTTTGACAAAACCCAGGTTGCAAAACTTGTGGAGAAACATCCCTCGGTGCTTGCTGCAAATGCAGAGAATACCCTTTTGCCTAAACTCAAGTTCCTACGTTCTATTGGGGTTTCCAACACTGACATGCCTAAGATCCTACTTCGTAACCATGTTTTATTGATGTGTAGCTTGGAAAATTGCCTCATCCCACGTTATGAGATCCTCCGGGGTATAGTTCATGATGATCAGAAGGTtgttagaatatttaaaaatgccGCATTTAGCATTACATATGGTGACGTGATGAATCACTTGGTTCCAAACATTAAGTTTTTGAGGCAATCTAGTGTGCCTCAAGCTTCCATCTCTGTCTTGATGACCCATTTTCCCAGTACAGCATATTTGAAGCATTACAAATTTGTGGAAGCTGTCAACACGGCTAAGGGAATTGGGTTTGATCCTTTGAAGATAACTTTTATCAAGGCTGTCATTGTGCTTTTAACTACTAGAAAAACAATGCGGGATTCAAAATTTGAGGTTTACGAGAGGTGGGGCTGGAACCACGATATGGCTCTTCGAGCGTTTAGAAAGTTTCCCGATTTTATGATGTTGTCAAAGGAGgcatatgcaaaaaaaatgagtttccTAGTGAAGGACATGGGTTTGCCACCTCAAGATATTGCTGAATATCCTCTGGTTCTATCCTACAGCTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATTAAAATCTTGCAATCAAAAGGTCTGCTTAAGAATGATTTGCACTTCGGTTCCTTTATGTGCATAACTGAGGAAAACTTTTTGAAGAAATTTGTCACCAATTTTCTGGATGATCTGCCTCTTTTATCAGATGTCTACAAAGGTTTGATCAATCATCAGAATGAAATATAG 1200 0.3883 MVPNFLLIARLTASSSSFTRYKSTRFQLGSHSPLQHKHNASLFNFNSFTSARNHHKGDTFTVSYLVNSCGVSPTLASTLSNRLNLKNPDGPDAVIDLLNNYGFDKTQVAKLVEKHPSVLAANAENTLLPKLKFLRSIGVSNTDMPKILLRNHVLLMCSLENCLIPRYEILRGIVHDDQKVVRIFKNAAFSITYGDVMNHLVPNIKFLRQSSVPQASISVLMTHFPSTAYLKHYKFVEAVNTAKGIGFDPLKITFIKAVIVLLTTRKTMRDSKFEVYERWGWNHDMALRAFRKFPDFMMLSKEAYAKKMSFLVKDMGLPPQDIAEYPLVLSYSLEKRIIPRFSVIKILQSKGLLKNDLHFGSFMCITEENFLKKFVTNFLDDLPLLSDVYKGLINHQNEI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0790 399 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 392 - -
Ssu9g0790 399 Gene3D Transcription termination factor 3, mitochondrial 180 381 IPR038538 -
Ssu9g0790 399 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 SMART mt_12 319 353 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 SMART mt_12 109 140 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 SMART mt_12 287 318 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 PANTHER CGI-12 PROTEIN-RELATED 35 392 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 Pfam mTERF 95 308 IPR003690 GO:0003690|GO:0006355
Ssu9g0790 399 Pfam mTERF 271 370 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0790 Ssu-Chr9 34860538 34861737 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu9g0790 mTERF 5.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0790 K15032 - gmx:100788793 568.155