Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0789 ATGCACTATTTTTTGATTGCTAGATTAAAAACTGGGACCCCCCGTTATGGTGTTCTCTGTTACAATGCCATTCTTTTCTTTACTTCACGTACTCTATCTGTATCAAACACAAATCACCGCAAAGATGGCACCTTTAATGTATTTAGCCTCATCAACTCATGTGGGTTGTCCCCAGAAAAGGCCCTCAAACTCTCCAAAAGGCTGGAATTGAAAAACCCAGATGGGGCAAATGCTGTAATGGATCTTCTCAGGAACTATGGGTTCTCCCAGACTCAGTTATGTAGACTTGTAAAGAAAATCCCTTCTGTGCTTTTGTCAAAACCTGACAAGACCCTTTTGCCAAAACTCAAGTTCTTTCATTCTATTGGGTTTTCAACCACTGACCTTCCCAGATTCCTCATTGGAAACACTTCATTTTTGGGATTAAGCTTGGACAAAACCATTATCCCGCGTTACGAGATCGTCAAGAGTCTAGTTCACGGCGATAAGGAAGTAGTTTCCACATTGAAGCATGATAGGTGGTACTTTAACCGTGGAATGTTCATAAATGATTCAGTTCAAAATGTAGGGGCTTTGAGACAGCTTGGGGTGCCTCAACGTTCCATTTCCTTCTTGGTAACCAATTTTCCTAGTGTAACGTTTATGAAGCATTCGAGATTTGCTGAGGCTATGGAGAAAGTGGGGGAAATGGGGTTTGATCctttgaaatcaaattttgttttggcaCTTCAAGTGCTTGCAAAGATGGATGAAGCAATGTGGAAATCAAAATTAGAGGTTTTTGAGAGGTGGGGCTGGTCCAGAGATATCTGTCTCTCAGCTTTCAAAAAGCATCCCCAGTTTATGATGTTGTCGGAAAAgaagattatgaaaatattgagCTTCTTGATGGAAGATATGGGTTTGCCCCTAGAAGACATCGCCAGATGCCCTGTGATTCTTAAATGCAACTTGGAGAAGACAGTTATCCCTAGATTTGcagttgttaaaattttgaagtcaaGGGGTTTGACAAAGAGAGATTTGAAAATAAGTAGCTTTATTAAGATCAGTGAGAAAGTGTTTTTGGAGAGATATGTGACACGGTTTCAGAAAAATGAGCCACTACTATTAGATGCATACAAAGGTCTGAAGTCAAATTGA 1143 0.385 MHYFLIARLKTGTPRYGVLCYNAILFFTSRTLSVSNTNHRKDGTFNVFSLINSCGLSPEKALKLSKRLELKNPDGANAVMDLLRNYGFSQTQLCRLVKKIPSVLLSKPDKTLLPKLKFFHSIGFSTTDLPRFLIGNTSFLGLSLDKTIIPRYEIVKSLVHGDKEVVSTLKHDRWYFNRGMFINDSVQNVGALRQLGVPQRSISFLVTNFPSVTFMKHSRFAEAMEKVGEMGFDPLKSNFVLALQVLAKMDEAMWKSKLEVFERWGWSRDICLSAFKKHPQFMMLSEKKIMKILSFLMEDMGLPLEDIARCPVILKCNLEKTVIPRFAVVKILKSRGLTKRDLKISSFIKISEKVFLERYVTRFQKNEPLLLDAYKGLKSN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0789 380 PANTHER CGI-12 PROTEIN-RELATED 26 377 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 Pfam mTERF 80 296 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 Pfam mTERF 248 356 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Ssu9g0789 380 Gene3D Transcription termination factor 3, mitochondrial 182 366 IPR038538 -
Ssu9g0789 380 Gene3D Transcription termination factor 3, mitochondrial 48 180 IPR038538 -
Ssu9g0789 380 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0789 Ssu-Chr9 34771314 34772456 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu9g0789 mTERF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0789 K15032 - gmx:106799612 602.823