Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0787 ATGCGCTTTCATATTAGATGCAAAACAagtcttatttatatatatatatgtgcttCCATTAAGCTTCTCCAGTTGTTGCTGCACGTCGTGGAagtgaagaaaatgaagaattcAAAGAAAACCGGCGTACGGAAATACCACAAATCGGAAAATCCACGCTTGCGGTGGACACCTGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTCTAGGTGGAAAAAACAGGGCAACCCCAAAGAACATTCTGCAGATGATGCATGTGAAAGGACTGAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACATGAAGGGACATACGACTCTCACAACAATGCATCAGGAGATGGAAGGAAATGAACATGTTAACGATCTCCCAATCTGCTCCAATTGTTCATTCCAAAGATCACAAGGAACTAAATTAAGAGCATCAAAATATGATACGGGGATTGTCAATCAAGAAATTCACCCGTTTGACAATAAAGGACTTTCACAGACCAGTGAAACTGATTACGATCTAAATCAGGAACCCGAGTCAAGTGCGTGCTTACTTAGTGATACGTCAAACAATGAAGAAAATAGCAGGACAATGAAATTTCTTGATCACTCATTCTTTTTTAGATCTCCACTAATTCCAACGATGCACGGTGATCAAGAGAGAATGTGTTTTTCTTCACCAAATACAGCAGATAATCATGTCGCTGATTCTAATTCTGTACAATCTCATGGGagcaattatataaatttagacctAACAATATGA 771 0.3658 MRFHIRCKTSLIYIYICASIKLLQLLLHVVEVKKMKNSKKTGVRKYHKSENPRLRWTPELHEYFVEVVEGLGGKNRATPKNILQMMHVKGLRISHIKSHLQMYRNMKGHTTLTTMHQEMEGNEHVNDLPICSNCSFQRSQGTKLRASKYDTGIVNQEIHPFDNKGLSQTSETDYDLNQEPESSACLLSDTSNNEENSRTMKFLDHSFFFRSPLIPTMHGDQERMCFSSPNTADNHVADSNSVQSHGSNYINLDLTI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0787 256 Gene3D - 51 108 - -
Ssu9g0787 256 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 34 217 - -
Ssu9g0787 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 108 IPR017930 -
Ssu9g0787 256 SUPERFAMILY Homeodomain-like 50 105 IPR009057 -
Ssu9g0787 256 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Ssu9g0787 256 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Ssu9g0787 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 34 217 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0787 Ssu-Chr9 34720324 34724912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0787 43 107 G2-like Transcription Factor Family AT2G42660 63.077 4.46e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu9g0787 Myb_DNA-binding 7.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0787 - - ccaj:109790621 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0787 9 34720324 34724912 Ssu6g3354 6 75731930 75736349 PCT